Non-Coding RNA Search

Ss1.1-rski0113_n1.5

Sequence:


               
               TCTACATGTGCTTCGTGTGTTCATTTTAAAAGCGGGGGAGGGGTGCAGATAGTCCTTTAG
CTGCTTTAACTATTTAATCCAGTCATCACAAGACATAAATGACTTCAATAGTTTATCCAT
CTTGATTTTCAAGTGTCGTTTCACAGACTCCATACACGAATTTGTTTATTGTGGGGTTAC
AAGCCTGCGATGAGTGTATATATAGACTATTACTAATTCCTATCAAGACGGAAAATTAAA
CGGCTGCATGATGGAAGCTTAGAAGAAAAAAAGCAGAAACTTGAATTCATTAAGCATGTT
TGGGGAAACATAGAATCTTAACTCAGTGCCTCTGTCTGCAATGTGGAAACCTTCAACTTT
GTTCACCAAAATTGTATTATACCTGTATATATATATAGATATAAATATAGTAGCGTGAAT
CCAAACCACCAGTTTTAAGTCTCTGATAGCCAAATGAAAATAAATAAGCCACAGAATAAC
GCAAATGTTCAACCCATCTTTGTCTCTGAGGTTAATGAAGACCGTCAAAATGACCATACA
TTTCATTACTTTGAATGAATTTCAAATTATGAAATGCCACTGTGATTTTCATTGGCTGTA
GTATAGCATCGTTGCTTTAGCTGTGCTTTCCCAGGATAAGAAGGCCTTGGTGTTTTTACC
ACAGAAACTGTCAGAAGTCAGCTCTGGGAGTTCCCTTATGCCTCAGCGGGTTAAGAATTC
ACCACAGTGGCTTGGGTCGCTGCTGTGGCACAGGTTCAAACCTGCCCCAGGAACTTCCAC
GTGCCGTGCATGCGGCCAGAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTACATGTGCTTCGTGTGTTCATTTTAAAAGCGGGGGAGGGGTGCAGATAGTCCTTTAG
CTGCTTTAACTATTTAATCCAGTCATCACAAGACATAAATGACTTCAATAGTTTATCCAT
CTTGATTTTCAAGTGTCGTTTCACAGACTCCATACACGAATTTGTTTATTGTGGGGTTAC
AAGCCTGCGATGAGTGTATATATAGACTATTACTAATTCCTATCAAGACGGAAAATTAAA
CGGCTGCATGATGGAAGCTTAGAAGAAAAAAAGCAGAAACTTGAATTCATTAAGCATGTT
TGGGGAAACATAGAATCTTAACTCAGTGCCTCTGTCTGCAATGTGGAAACCTTCAACTTT
GTTCACCAAAATTGTATTATACCTGTATATATATATAGATATAAATATAGTAGCGTGAAT
CCAAACCACCAGTTTTAAGTCTCTGATAGCCAAATGAAAATAAATAAGCCACAGAATAAC
GCAAATGTTCAACCCATCTTTGTCTCTGAGGTTAATGAAGACCGTCAAAATGACCATACA
TTTCATTACTTTGAATGAATTTCAAATTATGAAATGCCACTGTGATTTTCATTGGCTGTA
GTATAGCATCGTTGCTTTAGCTGTGCTTTCCCAGGATAAGAAGGCCTTGGTGTTTTTACC
ACAGAAACTGTCAGAAGTCAGCTCTGGGAGTTCCCTTATGCCTCAGCGGGTTAAGAATTC
ACCACAGTGGCTTGGGTCGCTGCTGTGGCACAGGTTCAAACCTGCCCCAGGAACTTCCAC
GTGCCGTGCATGCGGCCAGAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               346-448, - strand, RNAz p=0.93836

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-448, - strand, RNAz p=0.93836

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-686, gnl|bosTau2|chr19 (43699881-43700553)
               

               
               1-686, gnl|Hg17|chr17 (63121800-63122501)
               

               
               1-686, gnl|Mm7|chr11 (107318836-107318144)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-686, gnl|bosTau2|chr19 (43699881-43700553)
               

               
               1-686, gnl|Hg17|chr17 (63121800-63122501)
               

               
               1-686, gnl|Mm7|chr11 (107318836-107318144)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               med (0.232504)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)

	1-686, gnl\|bosTau2\|chr19 (43699881-43700553)
	1-686, gnl\|Hg17\|chr17 (63121800-63122501)
	1-686, gnl\|Mm7\|chr11 (107318836-107318144)

	med (0.232504)
	fty (0.17584)
	sin (0.174948)
	lun (0.150489)
	ski (0.146735)
	lin (0.145603)