Non-Coding RNA Search

Ss1.1-rski0116_j1.5

Sequence:


               
               GACAAATACCATGTTTCATAGCAAAGCTCTATTGGTGACTTCATTTGCTGTAAGAGTGAC
CAGCCGTCTTGTAGGCTTCTGACAGCCTCACTTCCAAGACATCACTGGCCTTCCAGATGA
GAAGATAAATGATGTCAATATAGGTTATCTTGGGAAGCGAAGGCTCAGGTCCCCATACAC
ACAGCTAACTAGCCTACTCTGAAAATCTTCATTCCTAGACATCAGAGTTAACATGGAACC
CAAGGTAAATAATGAGAAAAAAACCTACTCACCTTAGTGATAACGTTGCAGTGCTATGGA
GTCACATAATGATTCATAGGTAAATAGGGAATCGACCAATTTTGCTGGGTAGTTTTCCTG
TTCATAACACTGCAGGCCCTTCTGACCCAAAGAAAGCAAATTAGTCCTGGGTATGCTATG
TAGAGTCTTACATTACAAAGGCACAGTCTCTTTGTGAACAAAAGCACGTGTGAGCCTAAA
GCAAGCCCAAGCCTAAAGCAAGCTCAAACAGATGGCGAAACAAGATTTGCCTGCAAAGGA
ATCCATTTAAATGAACCAGCCCATAATATTTGAGGCACAATGTTACTATGAAGGGAAAAA
TTTAGATGATGTCTGTGTTCTTAGATAAATAACCATTAATCTGACAGCCAAATTCATTGG
GGTCCACCAATGTGTTCCATTTCTCACTGACCATGCAGGCACACATCGTGGAAATACTGG
TTTAACTACTAGTGTGTTACTGCCTCGTTTATCTACAGAATATTATTAACTAGAACATAA
TGCTTTCAAAGTTTAAGTTAATGTTATATATTATGTATAAATATATATATTCATAATGAG
ATATATGTAATGGTTAGTACAAAGTTTGGAGACTTAACAAATGCTCTAACCTTCTAGAGA
CAAAAGTCCTATCTTCTGTTTTCTTTTGTCTATTTTTCATTAGTGATCCATTGTTAAATC
CAAACCCACTTTTACTGAAAAATACTGTACATGTGTAGGATGTTCAGTTGTTTTTTTGTA
AAATATAGTAGAATGGTTGTAATTGATACTGGCCAAAATCAATGTTATTCCATATTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAATACCATGTTTCATAGCAAAGCTCTATTGGTGACTTCATTTGCTGTAAGAGTGAC
CAGCCGTCTTGTAGGCTTCTGACAGCCTCACTTCCAAGACATCACTGGCCTTCCAGATGA
GAAGATAAATGATGTCAATATAGGTTATCTTGGGAAGCGAAGGCTCAGGTCCCCATACAC
ACAGCTAACTAGCCTACTCTGAAAATCTTCATTCCTAGACATCAGAGTTAACATGGAACC
CAAGGTAAATAATGAGAAAAAAACCTACTCACCTTAGTGATAACGTTGCAGTGCTATGGA
GTCACATAATGATTCATAGGTAAATAGGGAATCGACCAATTTTGCTGGGTAGTTTTCCTG
TTCATAACACTGCAGGCCCTTCTGACCCAAAGAAAGCAAATTAGTCCTGGGTATGCTATG
TAGAGTCTTACATTACAAAGGCACAGTCTCTTTGTGAACAAAAGCACGTGTGAGCCTAAA
GCAAGCCCAAGCCTAAAGCAAGCTCAAACAGATGGCGAAACAAGATTTGCCTGCAAAGGA
ATCCATTTAAATGAACCAGCCCATAATATTTGAGGCACAATGTTACTATGAAGGGAAAAA
TTTAGATGATGTCTGTGTTCTTAGATAAATAACCATTAATCTGACAGCCAAATTCATTGG
GGTCCACCAATGTGTTCCATTTCTCACTGACCATGCAGGCACACATCGTGGAAATACTGG
TTTAACTACTAGTGTGTTACTGCCTCGTTTATCTACAGAATATTATTAACTAGAACATAA
TGCTTTCAAAGTTTAAGTTAATGTTATATATTATGTATAAATATATATATTCATAATGAG
ATATATGTAATGGTTAGTACAAAGTTTGGAGACTTAACAAATGCTCTAACCTTCTAGAGA
CAAAAGTCCTATCTTCTGTTTTCTTTTGTCTATTTTTCATTAGTGATCCATTGTTAAATC
CAAACCCACTTTTACTGAAAAATACTGTACATGTGTAGGATGTTCAGTTGTTTTTTTGTA
AAATATAGTAGAATGGTTGTAATTGATACTGGCCAAAATCAATGTTATTCCATATTTTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               10-1080, gnl|bosTau2|chr20 (37567302-37568343)
               

               
               10-1080, gnl|Hg17|chr9 (76039252-76040326)
               

               
               10-1080, gnl|Mm7|chr19 (17260175-17259130)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1080, gnl|bosTau2|chr20 (37567302-37568343)
               

               
               10-1080, gnl|Hg17|chr9 (76039252-76040326)
               

               
               10-1080, gnl|Mm7|chr19 (17260175-17259130)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               lin (0.291206)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	10-1080, gnl\|bosTau2\|chr20 (37567302-37568343)
	10-1080, gnl\|Hg17\|chr9 (76039252-76040326)
	10-1080, gnl\|Mm7\|chr19 (17260175-17259130)

	lin (0.291206)
	ece (0.229305)
	eye (0.170503)
	ski (0.146735)
	sug (0.127291)
	tra (0.123092)