Non-Coding RNA Search

Ss1.1-rski0117_g15.5

Sequence:


               
               TACATAGAAATGCACAGTCCTGTGTGACAGGACTTTCTAGAGCAGTGGGAGCAATGGAAC
GGTCTCTTTGTATCAGAGACCTTGTTCCGGTTCTTCCTTGTATCGGAAGCATGCAAGGGT
GGCCCTCTGGCTCACTAAACTGTATTAAAGTCATCAGCCATTTCTAGAAGACCTTGCCAA
AACAGTTCCCTTGCAATATGGCAGCTGGGATTTAAGGGAAGAAGCAAAAGCTCAACTTTG
ACCCTAAGATAGAAAGCTATTTATTTGTCGTCAGTGTTCAAGGCATGACTAGTATTGCTA
ATGAGTCTAATAAATTCCCACACTTCCTGACATGAACACTAATGGTGTTGTCCTACTAAA
ACTTGCTTTGTTTTCGTTTCTTAACTGGTCAGTCAGTCATCCACAATAAGCTATGATGGT
AACTGTTATAACATGTAAGTCAGTCTTAGTTGCAAGGCTATATACCGTGAAGGTTGAAGT
AGGTTGGGTTTCATTTCTATCCTTCCATACACAGCTCATTTAATTTTAGGGTTAACTTAA
TTGGCATCACACCTGTTGTATGATATTATACATTATCCTTTATTTATGTAAAATAAAATG
CCTTATATATTATTAAAGAGTAAGTGCAATAATATGAAATAGCCTGTACATTTTAAAAAA
TGTTGTCGCCAAGTTATGTAAATCCACATCTCTATAAACAACCTTTTTTAAGTAATTTTA
AAAAAATAAACTGTTTACTACTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATAGAAATGCACAGTCCTGTGTGACAGGACTTTCTAGAGCAGTGGGAGCAATGGAAC
GGTCTCTTTGTATCAGAGACCTTGTTCCGGTTCTTCCTTGTATCGGAAGCATGCAAGGGT
GGCCCTCTGGCTCACTAAACTGTATTAAAGTCATCAGCCATTTCTAGAAGACCTTGCCAA
AACAGTTCCCTTGCAATATGGCAGCTGGGATTTAAGGGAAGAAGCAAAAGCTCAACTTTG
ACCCTAAGATAGAAAGCTATTTATTTGTCGTCAGTGTTCAAGGCATGACTAGTATTGCTA
ATGAGTCTAATAAATTCCCACACTTCCTGACATGAACACTAATGGTGTTGTCCTACTAAA
ACTTGCTTTGTTTTCGTTTCTTAACTGGTCAGTCAGTCATCCACAATAAGCTATGATGGT
AACTGTTATAACATGTAAGTCAGTCTTAGTTGCAAGGCTATATACCGTGAAGGTTGAAGT
AGGTTGGGTTTCATTTCTATCCTTCCATACACAGCTCATTTAATTTTAGGGTTAACTTAA
TTGGCATCACACCTGTTGTATGATATTATACATTATCCTTTATTTATGTAAAATAAAATG
CCTTATATATTATTAAAGAGTAAGTGCAATAATATGAAATAGCCTGTACATTTTAAAAAA
TGTTGTCGCCAAGTTATGTAAATCCACATCTCTATAAACAACCTTTTTTAAGTAATTTTA
AAAAAATAAACTGTTTACTACTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               104-219, - strand, RNAz p=0.965282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-219, - strand, RNAz p=0.965282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-744, gnl|bosTau2|chr20 (26830049-26829338)
               

               
               3-744, gnl|Hg17|chr5 (32146037-32146794)
               

               
               3-744, gnl|Mm7|chr15 (12420309-12419674)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-744, gnl|bosTau2|chr20 (26830049-26829338)
               

               
               3-744, gnl|Hg17|chr5 (32146037-32146794)
               

               
               3-744, gnl|Mm7|chr15 (12420309-12419674)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               hea (0.408998)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               tra (0.123092)

	3-744, gnl\|bosTau2\|chr20 (26830049-26829338)
	3-744, gnl\|Hg17\|chr5 (32146037-32146794)
	3-744, gnl\|Mm7\|chr15 (12420309-12419674)

	hea (0.408998)
	aor (0.390549)
	bla (0.373042)
	gul (0.355177)
	liv (0.292569)
	lyg (0.266205)
	spc (0.226732)
	fco (0.157208)
	ski (0.146735)
	tra (0.123092)