Non-Coding RNA Search

Ss1.1-rski0117_k11.5

Sequence:


               
               CGGCGGCGGGGACTAGTCCGCGGCCCTGCTGGGAGAGAAAGCGAAGCGGAGGTCTTCCCC
GGCGACGCGGAGAGCAGTAGTTCCAGAGAACTGCTGGTTTATATTTTAGCTCTTGCCAAG
TTGTGAAAATAGTGAAGGATGATTAGACTACTAAACCTTCAAATTGCTCTCTGGTTAATC
ATCTTTAGAAGACTGGATTTCTGGACATCTACTCTACTCCATCTCTATTGACTTTTAAAA
CATGATAACACAAACCTATAACACTGGCAGTCATCCATGAACCTTTAATTACGTTGATTA
ATAGCATTTGAAGCTTCCTCAGGGAATAAACAATGACATCAGCAGTGGTTGACAGTGGAG
GTTCTATTTTGGAGCTTTCCAGCAATGGAGTAGAAAATCAAGAGGTTAGGCATCCAATGT
ATTACATTTTTGTTTTGTTTATAGAAATTAATGCATGAACTAATGAATTTAATGGGAAAT
AGGTAATTGAGAGTAGGAATGTACAATGCATGAAACTACATGTGTGTCATGTGTCCTCAT
ATAATTAGGAAATAGAAGGTTGTGGAAGGTACTGTTGGGCTTGAGTTGCCTGAGTTGTTG
GAACATGTGTATATTGGAATGACCTGGGAGGGAAAAACTGAAAGAACAGTAGTGTTAGTT
GAGAAAGTAGATTTAGTTTCCTGATAAAATCCATTGTTTTGTCTTTTAGAGTATATAGGT
ATATACCATATATCAAATTAGATGCATCTTAATTTAGAATTTTGTATCTCTTTAGTTATT
GTCTTTGTTTTTTGACTATTACATCTAATTCAATGTGGGAATCCCATCATATTTTAATCA
TATATTATTTGTACTTAAGAATTTAGATAATTTGTAAATTAGAAAAGAAATTAAGTTTTT
GAAATTTTATACTTGGAGAATTTTGCATCATTAGCATATTTGGTTATTATTATTCTTAAC
ATTAAAGAATAAGAGATAGGAGTAGAAAAATAACAGTACCGGAAATATATGGACTTTAGA
GCCTGGCTTCTGTCCCCACCATTCAGTAAAGGCTGAATATTGGGAGGTATCTAAATTAAA
ATGAAGTAATGCTGTCTCAATAATAGACAAATATTTGCTCAGAGATTAGATGGGAACTGG
AATGGGAAAATGGAAAATTTACTGTATTTGAAAACTCTGTTTTCTGTATTCTGTGATATA
TACTGCTGTTACTGGTACTTAGTACCAGCACAGTGGTCCTAGTGACATGACTGAGAAACA
GGATGTCATGCTGTTTGTTCTGAAGTCTGTGTTCTTTTTCTTGCTTGCTTGGTGTCTCCT
CAGTCTTCCTAAATAGCTTTGGGCAAAGTTGGTGGGAAGGGGATAAAGTGAAGGTACTGC
TTTTCCTTTGTTTTCAGTGGACTTGGTCACTGAAATGTTCCTGTTATATTTGAATCTAAA
ACTTGTTCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCGGGGACTAGTCCGCGGCCCTGCTGGGAGAGAAAGCGAAGCGGAGGTCTTCCCC
GGCGACGCGGAGAGCAGTAGTTCCAGAGAACTGCTGGTTTATATTTTAGCTCTTGCCAAG
TTGTGAAAATAGTGAAGGATGATTAGACTACTAAACCTTCAAATTGCTCTCTGGTTAATC
ATCTTTAGAAGACTGGATTTCTGGACATCTACTCTACTCCATCTCTATTGACTTTTAAAA
CATGATAACACAAACCTATAACACTGGCAGTCATCCATGAACCTTTAATTACGTTGATTA
ATAGCATTTGAAGCTTCCTCAGGGAATAAACAATGACATCAGCAGTGGTTGACAGTGGAG
GTTCTATTTTGGAGCTTTCCAGCAATGGAGTAGAAAATCAAGAGGTTAGGCATCCAATGT
ATTACATTTTTGTTTTGTTTATAGAAATTAATGCATGAACTAATGAATTTAATGGGAAAT
AGGTAATTGAGAGTAGGAATGTACAATGCATGAAACTACATGTGTGTCATGTGTCCTCAT
ATAATTAGGAAATAGAAGGTTGTGGAAGGTACTGTTGGGCTTGAGTTGCCTGAGTTGTTG
GAACATGTGTATATTGGAATGACCTGGGAGGGAAAAACTGAAAGAACAGTAGTGTTAGTT
GAGAAAGTAGATTTAGTTTCCTGATAAAATCCATTGTTTTGTCTTTTAGAGTATATAGGT
ATATACCATATATCAAATTAGATGCATCTTAATTTAGAATTTTGTATCTCTTTAGTTATT
GTCTTTGTTTTTTGACTATTACATCTAATTCAATGTGGGAATCCCATCATATTTTAATCA
TATATTATTTGTACTTAAGAATTTAGATAATTTGTAAATTAGAAAAGAAATTAAGTTTTT
GAAATTTTATACTTGGAGAATTTTGCATCATTAGCATATTTGGTTATTATTATTCTTAAC
ATTAAAGAATAAGAGATAGGAGTAGAAAAATAACAGTACCGGAAATATATGGACTTTAGA
GCCTGGCTTCTGTCCCCACCATTCAGTAAAGGCTGAATATTGGGAGGTATCTAAATTAAA
ATGAAGTAATGCTGTCTCAATAATAGACAAATATTTGCTCAGAGATTAGATGGGAACTGG
AATGGGAAAATGGAAAATTTACTGTATTTGAAAACTCTGTTTTCTGTATTCTGTGATATA
TACTGCTGTTACTGGTACTTAGTACCAGCACAGTGGTCCTAGTGACATGACTGAGAAACA
GGATGTCATGCTGTTTGTTCTGAAGTCTGTGTTCTTTTTCTTGCTTGCTTGGTGTCTCCT
CAGTCTTCCTAAATAGCTTTGGGCAAAGTTGGTGGGAAGGGGATAAAGTGAAGGTACTGC
TTTTCCTTTGTTTTCAGTGGACTTGGTCACTGAAATGTTCCTGTTATATTTGAATCTAAA
ACTTGTTCAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               166-1323, gnl|bosTau2|chr17 (12999529-13000662)
               

               
               166-1323, gnl|Hg17|chr4 (140416626-140415169)
               

               
               166-1323, gnl|Mm7|chr3 (51447981-51446971)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-1323, gnl|bosTau2|chr17 (12999529-13000662)
               

               
               166-1323, gnl|Hg17|chr4 (140416626-140415169)
               

               
               166-1323, gnl|Mm7|chr3 (51447981-51446971)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	166-1323, gnl\|bosTau2\|chr17 (12999529-13000662)
	166-1323, gnl\|Hg17\|chr4 (140416626-140415169)
	166-1323, gnl\|Mm7\|chr3 (51447981-51446971)

	gul (0.177588)
	tbr (0.154178)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	thg (0.126791)
	spc (0.113366)