Non-Coding RNA Search

Ss1.1-rski0117_p19.5

Sequence:


               
               GCCTAAATTATCTTAAATAGTTACCTCCAAGTAGCCTCTCACTTTTTGTAGCATAATTAG
CACAGATTCTGTGAGAAGACTGAATTTTTACAACCCTTAAATAGTGCAGGTGGACTGGTT
TCTCCAGAAAAATTCCCTGTGAAATCAGTCCATAACTGGAAGAAATATCTGTTAAGAATA
AGGTTTAGCTTGAAGACTTTGAATTAGATTTATTTTACACTTAACACCATAAACATTTAA
AATCTCATGAAGCAAAAGCAAGGTGTTTCTCAAACAACTCCAGAGCTCAAATTAAAAAAA
AAAAAAAAGTGTCTGCTGTAGTCTGTAGTGCTCAGTTCCTTTCCCCCAGTCTTTGATGAG
CTTGAGAATATTACTGCCTTTGTTAATTTTAGCTAAGAGGGGTCACTCAGGATCCTATAA
ATATCTGTGTTGCTCTAAGGCCAACAAGAGATTACAGAGCTTTTGGGGAAGGGAAAGAGG
AAATTTTGTGGATAGACAAGTTCATAGAGGCCCTTTGGCAAGACCCATCAGCCCACAATC
CTTTGAAGCCTACTGATACTACCTTTGAGACATACTGGTTGAACTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTAAATTATCTTAAATAGTTACCTCCAAGTAGCCTCTCACTTTTTGTAGCATAATTAG
CACAGATTCTGTGAGAAGACTGAATTTTTACAACCCTTAAATAGTGCAGGTGGACTGGTT
TCTCCAGAAAAATTCCCTGTGAAATCAGTCCATAACTGGAAGAAATATCTGTTAAGAATA
AGGTTTAGCTTGAAGACTTTGAATTAGATTTATTTTACACTTAACACCATAAACATTTAA
AATCTCATGAAGCAAAAGCAAGGTGTTTCTCAAACAACTCCAGAGCTCAAATTAAAAAAA
AAAAAAAAGTGTCTGCTGTAGTCTGTAGTGCTCAGTTCCTTTCCCCCAGTCTTTGATGAG
CTTGAGAATATTACTGCCTTTGTTAATTTTAGCTAAGAGGGGTCACTCAGGATCCTATAA
ATATCTGTGTTGCTCTAAGGCCAACAAGAGATTACAGAGCTTTTGGGGAAGGGAAAGAGG
AAATTTTGTGGATAGACAAGTTCATAGAGGCCCTTTGGCAAGACCCATCAGCCCACAATC
CTTTGAAGCCTACTGATACTACCTTTGAGACATACTGGTTGAACTAAT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-573, gnl|bosTau2|chr3 (14574681-14575231)
               

               
               1-573, gnl|canFam2|chr17 (64172337-64173258)
               

               
               1-573, gnl|dasNov1|scaffold_23363 (34783-33839)
               

               
               1-573, gnl|echTel1|scaffold_312836 (36636-35742)
               

               
               1-573, gnl|hg17|chr1 (148891799-148892741)
               

               
               1-573, gnl|Hg17|chr1 (148892490-148891916)
               

               
               1-573, gnl|loxAfr1|scaffold_49734 (8717-9654)
               

               
               1-573, gnl|mm7|chr3 (93550857-93549967)
               

               
               1-573, gnl|Mm7|chr3 (93550205-93550745)
               

               
               1-573, gnl|monDom2|scaffold_44 (5447765-5448727)
               

               
               1-573, gnl|oryCun1|scaffold_198276 (234117-235049)
               

               
               1-573, gnl|panTro1|chr1_random (22995606-22996552)
               

               
               1-573, gnl|rheMac2|chr1 (130599078-130600026)
               

               
               1-573, gnl|rn3|chr2 (186485077-186484179)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr3 (14574681-14575231)
               

               
               1-573, gnl|canFam2|chr17 (64172337-64173258)
               

               
               1-573, gnl|dasNov1|scaffold_23363 (34783-33839)
               

               
               1-573, gnl|echTel1|scaffold_312836 (36636-35742)
               

               
               1-573, gnl|hg17|chr1 (148891799-148892741)
               

               
               1-573, gnl|Hg17|chr1 (148892490-148891916)
               

               
               1-573, gnl|loxAfr1|scaffold_49734 (8717-9654)
               

               
               1-573, gnl|mm7|chr3 (93550857-93549967)
               

               
               1-573, gnl|Mm7|chr3 (93550205-93550745)
               

               
               1-573, gnl|monDom2|scaffold_44 (5447765-5448727)
               

               
               1-573, gnl|oryCun1|scaffold_198276 (234117-235049)
               

               
               1-573, gnl|panTro1|chr1_random (22995606-22996552)
               

               
               1-573, gnl|rheMac2|chr1 (130599078-130600026)
               

               
               1-573, gnl|rn3|chr2 (186485077-186484179)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ski (0.733676)
               

               
               ton (0.526501)
               

               
               nep (0.183925)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.733676)
               

               
               ton (0.526501)
               

               
               nep (0.183925)

	1-573, gnl\|bosTau2\|chr3 (14574681-14575231)
	1-573, gnl\|canFam2\|chr17 (64172337-64173258)
	1-573, gnl\|dasNov1\|scaffold_23363 (34783-33839)
	1-573, gnl\|echTel1\|scaffold_312836 (36636-35742)
	1-573, gnl\|hg17\|chr1 (148891799-148892741)
	1-573, gnl\|Hg17\|chr1 (148892490-148891916)
	1-573, gnl\|loxAfr1\|scaffold_49734 (8717-9654)
	1-573, gnl\|mm7\|chr3 (93550857-93549967)
	1-573, gnl\|Mm7\|chr3 (93550205-93550745)
	1-573, gnl\|monDom2\|scaffold_44 (5447765-5448727)
	1-573, gnl\|oryCun1\|scaffold_198276 (234117-235049)
	1-573, gnl\|panTro1\|chr1_random (22995606-22996552)
	1-573, gnl\|rheMac2\|chr1 (130599078-130600026)
	1-573, gnl\|rn3\|chr2 (186485077-186484179)