Non-Coding RNA Search

Ss1.1-rski0118_p20.5

Sequence:


               
               ATAAAATGAAGAATATGAATGTGGCCGTACAAAGACTCACCATGGAGCTCCATCTTCTCG
GTCTGGATTATCCTGTGTGTGTTTGGACCTGGAATGATTTTTGCCTGAGGACACCAGAGA
TTCAGCTTGGCTTGCAACCACCTGCAGAGGTGATGGTGTGGAGGGTGAGGTGCCCCGCCC
TTGGTCTTGACGCGGTCACTGTGTTTTCTCTGGGGGAGGGGAGTGTTAAGGGCAGAGGTA
CAGACTCCGTGAAGGGGGCACGTGTTCTACAGGTTCCTGTGAAGCCAGCCTTATTCTGAC
GTATGGATGTCATGACATTTCAGGGAGCTCCTTGCCACGTGGTTGGCTTGGAAGCCCACC
TCTCTGGTCCAGAGTAGCATCCCCAAGAAACACTCCATAAAATAACCACTTGTTTAACAT
TTGGATAATAGACTCTACACCTCTCCTTTCTCTGCAAAGAAGAATCTTGAACATTCATGA
TGCCAATGAAGAAAGTCTTGAAAGGACTGAAATAGAATTGAAAACAACTTTTTTTTTTTT
TATTTTCCATGTTATGGAAAGTTTTGAAAGAACTTACGTGTAATGAAAAGCAACTTTTTT
TTTTTTTTAATTTTACATCGCCCTGATAGAACTCCTGTATGGCAGTCAGCCTCTAACAAG
AGCATTGATGACGTGCAAAGTTGGCTTTCTGCAGCTCATTGCTGTACCTATTGAAATGCT
CCCCATGGAGTTCCCCTAGTGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTT
GCGGGTTCGATCCCTGCCTTTGCTCAGTGGGTTAAG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GACAAAAAAAGAAGAAAAAATGAAATGCTCCCCATGTACCAAGCTGTC
ATTTGCTGCCTCCAGGTCAGGTGAGGAGATGTTTGGCTCTGGTGCCTTTTGTTTTTTATC
TCAGTGCTGCCTTCCCATCCACCCACTCCCCCTTCTCCCTGCATGGGGGGCAACAGCATT
TCCAGAAAGTACCTTGAGAAATCAGGGTATCCGGGTTTTTAATGATCCCCTGTAGTTCTG
AGCTTCAATCATTCATCAGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAATGAAGAATATGAATGTGGCCGTACAAAGACTCACCATGGAGCTCCATCTTCTCG
GTCTGGATTATCCTGTGTGTGTTTGGACCTGGAATGATTTTTGCCTGAGGACACCAGAGA
TTCAGCTTGGCTTGCAACCACCTGCAGAGGTGATGGTGTGGAGGGTGAGGTGCCCCGCCC
TTGGTCTTGACGCGGTCACTGTGTTTTCTCTGGGGGAGGGGAGTGTTAAGGGCAGAGGTA
CAGACTCCGTGAAGGGGGCACGTGTTCTACAGGTTCCTGTGAAGCCAGCCTTATTCTGAC
GTATGGATGTCATGACATTTCAGGGAGCTCCTTGCCACGTGGTTGGCTTGGAAGCCCACC
TCTCTGGTCCAGAGTAGCATCCCCAAGAAACACTCCATAAAATAACCACTTGTTTAACAT
TTGGATAATAGACTCTACACCTCTCCTTTCTCTGCAAAGAAGAATCTTGAACATTCATGA
TGCCAATGAAGAAAGTCTTGAAAGGACTGAAATAGAATTGAAAACAACTTTTTTTTTTTT
TATTTTCCATGTTATGGAAAGTTTTGAAAGAACTTACGTGTAATGAAAAGCAACTTTTTT
TTTTTTTTAATTTTACATCGCCCTGATAGAACTCCTGTATGGCAGTCAGCCTCTAACAAG
AGCATTGATGACGTGCAAAGTTGGCTTTCTGCAGCTCATTGCTGTACCTATTGAAATGCT
CCCCATGGAGTTCCCCTAGTGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTT
GCGGGTTCGATCCCTGCCTTTGCTCAGTGGGTTAAG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GACAAAAAAAGAAGAAAAAATGAAATGCTCCCCATGTACCAAGCTGTC
ATTTGCTGCCTCCAGGTCAGGTGAGGAGATGTTTGGCTCTGGTGCCTTTTGTTTTTTATC
TCAGTGCTGCCTTCCCATCCACCCACTCCCCCTTCTCCCTGCATGGGGGGCAACAGCATT
TCCAGAAAGTACCTTGAGAAATCAGGGTATCCGGGTTTTTAATGATCCCCTGTAGTTCTG
AGCTTCAATCATTCATCAGCATTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-725, gnl|bosTau2|chr20 (37163213-37162508)
               

               
               1-725, gnl|Hg17|chr5 (9095571-9094870)
               

               
               1-725, gnl|Mm7|chr15 (32802008-32802688)
               


               
               837-1068, gnl|bosTau2|chr20 (37162521-37162280)
               

               
               837-1068, gnl|Hg17|chr5 (9094883-9094640)
               

               
               837-1068, gnl|Mm7|chr15 (32802675-32802896)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-725, gnl|bosTau2|chr20 (37163213-37162508)
               

               
               1-725, gnl|Hg17|chr5 (9095571-9094870)
               

               
               1-725, gnl|Mm7|chr15 (32802008-32802688)
               


               
               837-1068, gnl|bosTau2|chr20 (37162521-37162280)
               

               
               837-1068, gnl|Hg17|chr5 (9094883-9094640)
               

               
               837-1068, gnl|Mm7|chr15 (32802675-32802896)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ski (0.146735)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               ova (0.129132)

	1-725, gnl\|bosTau2\|chr20 (37163213-37162508)
	1-725, gnl\|Hg17\|chr5 (9095571-9094870)
	1-725, gnl\|Mm7\|chr15 (32802008-32802688)

	837-1068, gnl\|bosTau2\|chr20 (37162521-37162280)
	837-1068, gnl\|Hg17\|chr5 (9094883-9094640)
	837-1068, gnl\|Mm7\|chr15 (32802675-32802896)