Non-Coding RNA Search

Ss1.1-rski0119_g2.5

Sequence:


               
               CTCAATGTGCTGTGGCTTGATGTGGAATCTCCGTTCCCAGGCTAGGGATTGATCCCTGGC
CACAGCCATGAAAATGCTGAATCCTAACCGAGCAACAACCAAGAAGCCTCCCCCCCACCT
TGCCTTCTTTATTAATGTTGACTTTGAGGAAGATTGTGCGGAGCAGAATTTTAGCTCCAA
AACTAAGAGCCAAGACAAAAAACGAAGCAGGTGGAAAGGCCCGACTCAGGTGGGCATTGA
GATCTGAGCAGCTGTGGACGTGATGCTGGAGAGGTGAGCCCGTCCAGCCCTCGCCCCTGT
CCTGAACCATTTCTTGAGACTTGTTTTCTTCTTACCAGAACATTCCACAGATGCAGTAAG
GGCTTTGTGTAGAAAGGCTTTCACTTTTGAGATCCTTGAGTTTAAGGGATGACTTTTATG
AGCCACTCGTTTTCTTTTTTAGTGTAGAAAATGTTCTAAGTATACATATAATTCCTAAAA
CAGCAGAAGCAGGTTCGTTTGGAAAACCATGTTAAGGTTGGAATGTCACACGATACTCAT
TTCATCAATTTATTCAAATACGTACAAGCTCATACCAGGATGAAAAGAAAGTCAGACCTC
ACTGCAAAAGTTCAGCGTGTTTTTAAGACAAAAATGAGCAGTATTCAGCACAGATTTATT
AAATACCTTATAGAGCAGAGTCTGCCTGTTTAGTTTTTTTCTGCTCTCTGAAAGAGTAAA
TGCAGTTGTTGAAGCTTCTGACCAAGAATGAACTTGAGGAACTGAGCCCACGTTTCTAGG
GCTGTGATGATAGGTACCCCCGCCCCTTTGGGTACTGCTCCACGTGGCAAAGAGATTTAG
CTTTTATAACCAAAGTGAAGAAAGTGGATTTCTTTGGTTTGTTTTTGGATTTGTGTACCA
TTGATGCTAAGTGTTGCTAATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAATGTGCTGTGGCTTGATGTGGAATCTCCGTTCCCAGGCTAGGGATTGATCCCTGGC
CACAGCCATGAAAATGCTGAATCCTAACCGAGCAACAACCAAGAAGCCTCCCCCCCACCT
TGCCTTCTTTATTAATGTTGACTTTGAGGAAGATTGTGCGGAGCAGAATTTTAGCTCCAA
AACTAAGAGCCAAGACAAAAAACGAAGCAGGTGGAAAGGCCCGACTCAGGTGGGCATTGA
GATCTGAGCAGCTGTGGACGTGATGCTGGAGAGGTGAGCCCGTCCAGCCCTCGCCCCTGT
CCTGAACCATTTCTTGAGACTTGTTTTCTTCTTACCAGAACATTCCACAGATGCAGTAAG
GGCTTTGTGTAGAAAGGCTTTCACTTTTGAGATCCTTGAGTTTAAGGGATGACTTTTATG
AGCCACTCGTTTTCTTTTTTAGTGTAGAAAATGTTCTAAGTATACATATAATTCCTAAAA
CAGCAGAAGCAGGTTCGTTTGGAAAACCATGTTAAGGTTGGAATGTCACACGATACTCAT
TTCATCAATTTATTCAAATACGTACAAGCTCATACCAGGATGAAAAGAAAGTCAGACCTC
ACTGCAAAAGTTCAGCGTGTTTTTAAGACAAAAATGAGCAGTATTCAGCACAGATTTATT
AAATACCTTATAGAGCAGAGTCTGCCTGTTTAGTTTTTTTCTGCTCTCTGAAAGAGTAAA
TGCAGTTGTTGAAGCTTCTGACCAAGAATGAACTTGAGGAACTGAGCCCACGTTTCTAGG
GCTGTGATGATAGGTACCCCCGCCCCTTTGGGTACTGCTCCACGTGGCAAAGAGATTTAG
CTTTTATAACCAAAGTGAAGAAAGTGGATTTCTTTGGTTTGTTTTTGGATTTGTGTACCA
TTGATGCTAAGTGTTGCTAATTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               109-924, gnl|bosTau2|chr4 (51953113-51953979)
               

               
               109-924, gnl|Hg17|chr13 (44866498-44865637)
               

               
               109-924, gnl|Mm7|chr14 (70441731-70440640)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-924, gnl|bosTau2|chr4 (51953113-51953979)
               

               
               109-924, gnl|Hg17|chr13 (44866498-44865637)
               

               
               109-924, gnl|Mm7|chr14 (70441731-70440640)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               hea (1.02249)
               

               
               sug (0.509165)
               

               
               vin (0.332557)
               

               
               hlv (0.278513)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.02249)
               

               
               sug (0.509165)
               

               
               vin (0.332557)
               

               
               hlv (0.278513)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	109-924, gnl\|bosTau2\|chr4 (51953113-51953979)
	109-924, gnl\|Hg17\|chr13 (44866498-44865637)
	109-924, gnl\|Mm7\|chr14 (70441731-70440640)

	hea (1.02249)
	sug (0.509165)
	vin (0.332557)
	hlv (0.278513)
	ova (0.258264)
	bla (0.248694)
	pgl (0.236967)
	mgp (0.230681)
	fcc (0.197785)
	ldo (0.194005)
	fbs (0.175346)
	eye (0.170503)
	ski (0.146735)
	lin (0.145603)
	cly (0.120642)
	ecc (0.115035)