Non-Coding RNA Search

Ss1.1-rski0119_n24.5

Sequence:


               
               CGTATGCAGATGGAGCTGAGACTGAGGTGGACTGTAACCGCTGTGTGTGTGCCTGCGGAA
ACTGGGTCTGCACAGCCATGACCTGTGACGGAAAGAATCAGAAGGGGACCCAGACCCAGA
CAGAGGAGGAAATGACCAGATATGTCCAGGAGCTCCAAAAGCATCAGGAGACAGCTGAAA
AGACCAAGAGAGTGAGCACCAAAGAGATCTAATGAGGAGGCATCTGGGAATGGTGTCTAG
AGCCTGGCACCTTCTCTTCCACTTCAGCGCTGAGTCCAGTATACGCAAGTGTCTGCTACA
ATCGCCAAATCACCAGTATTTGCTTGTATAGCAATGAGTTTTATTTTGTCTATTTGTTTT
GCAATAGAGGAAATGGGGGTGGCTGGCTAGGAGGGAGAGGGCCATAGCCTTCATTTCTAG
GAGCGCTTTGAGAGAAACTGTAAATGATGCTCAGGGGCTGGAGACAAGTTAAGAAACTGC
ATCAGGGTTGGGAGAGTAGTGGACCCAGATCTGGAACACTTCTGAGTCCACCACAGCTTT
GATCATGCTGTAGGGAGTACAGGCAATGAGAAAGAACTTAGCAGGCTGTCCCCAGAGGAA
GGCTTTGGGAAAGTCAGTAGAGAAGACTGCATTCTGCTTCCAGCCCTTCCTGCTGCCATC
AGCGTAACAGATCTCCAGCATCTGTGCTTCTCCTCATGGCCCCAACCACTGGCTCTAGAT
ACATGGCCATCTTGCTAGTTACCCAATGACTGCAGGGTGCACCCAAATAATGCAGGTACT
TGTAGACTTTGAGCCCCTTAGAGACCTAACCAAATTTTAAAAATACTTGTTACCAAAGGT
GCTATTTTTCTGTAAACTTTTTTTTGGCAAGTCGATTTCACTCTTCAATTATTATCATTG
TATTATTGTTGTTGTTGTTTAATATTTTTATTTTCTTGACTAGAATTAAGCTTTTGTAAT
TATTTTTCATTAGTCCTACCATTTTAGAGGTGGGAGAGTTTGGGGTCCTTCTTGGTACAG
GGACTGCTATTACCCAGACTCCCCTCACCCTGCCACATACTAGATGTAGCCCAGAATTTG
CCCCCTGGCTTCCAGTGGGTCAGCAGCCTGCCAGAGAAGCAGGGTGTGCCTCGAACAGAA
GCCAGGAGAATTTTCTCTGTATAAAGCTTTTAAGATCCAAAAAGCAAATTTGTTTTCATT
TATTCTGATAGATTTATGCAAATCAGTATCCCAAAGAATGGAGACAAGTGCAGCTAAGCA
AGGCTTCGCTGTCCCAGCCTGTCAACATGCCCATTGATCTTCCACTAACGAGGACAGTGA
CTCTGGCCCTGTCTCTTCCTATTTCTGGGCCTCAGTTTCCTCAGTGAGCAGGTAGGAATG
CATTAAACTGTTGATCTGAGAAATTGTAAATTCTGTGGTTCTGATCATTGGTCAAGAAGG
AGACAAGTTCCTATGATTCTCCTCCTTCTCCTTAGGATAAATGAAACCTTACTGTCATAA
CAAGTATGGTCAGACAGCCAAAAACAAGATGACCAAATTTAACCTCAGTCTGAATGGCCC
CACGGGCTGTGCTGTGATGTAGAGCCCTCAGGTAAAGCCTGCTCAGAACTGTGAGAAGGA
GAAGCACTCCACTCTGTCCTTACTTGTACATTTCATCTTTAACCTCAGGAGCAGAAATGG
CTTTCCTATTAGAGATGAGGACAAAAGAAGGTTTCCCATTTCGAGGGAAGGCAAAAATTG
GAATTCAACTCAACACTGTGACAGTGTCTTTTTGGCTTCTGTGATAATTAACCCCACTCA
GTACCGTGTTTAAGATGCATTTGGAATAACAAAATTATAAACTTCACATAAGATCTCATT
TTCAGGAAGCAGATTATAGACCACCAGAGGGAAGTAACGTAGGCTATATTGCACAGGCAG
CTCTGAAAAAGTTGTGCTGAAAATGGAATTTGTTCTAAACAAGTTTCCTTTTTCTCCTTT
GAAAGACCATTCTCCACTTTGTTTAGAATTCTGAGCTTTTATAAACCATCCCACTTGAAA
GCTCTCTTCGAACCCCACTTGTGTGGTCTCAAATGCATCTCCCTGTCAAAATACCTTGGA
GAACTCCCAACAGCACACCTTGATCCACTTTTGCCAGTCCTTGGTCACTATTGAAGAGAG
GGCCGAAGTACCATTTGGTTTAAAGCAAGAAGGCAGAGTGTCTCCTCACCAGTTACATTT
AGGTCAGTGGTTGCCCTCCAAGATGACCCCATCCTGCAACACTGAATTCCCAAGAGCAAA
TCTGCATTCCTCCTGTAAATAGGGAAGCTACTGTCTGCACCATAGACTCACGTGATCTAA
CAGTCATTCATGGAAAGCTGCTAAATAGCCTAGTTTGGGGAGTTTTGCATGGAGCTTTGC
ATGGAGCAAATAAACAGGATTAAAACAGGTTCAGTTCCTCCAACTCTCTAAAAGCATCGG
GCCTAGACGACAAGCTTCCTTGCGCTTTCTCTGTGTGTATGTTTTTTATAAACATATTAC
AGCATCTGTTAAGATTCAGTGTCCATGGAAACCTTCTCAAATGCCATGACTCTGGACTCC
ATCACTCTTTGGAAAGCAGGGCTCCTCCACCTGCTAATAAGCCCATGTGGACCAGTCTGA
ATGTCTTTCCTTTACACTTATGTTTTTAAATAGTCAAATTTCAAGAAACAGTTTGGACAG
GTTTCTGTTGCCTGTGTGTTTGTGAAATGTATTTGTATTTAGTAGGCTTCCATATTTCAT
TTAACTTGTTTTTGTAACTCCTGATTCTTTTTTGGATACTATTGATAAATAAAGAAATTA
AAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTATGCAGATGGAGCTGAGACTGAGGTGGACTGTAACCGCTGTGTGTGTGCCTGCGGAA
ACTGGGTCTGCACAGCCATGACCTGTGACGGAAAGAATCAGAAGGGGACCCAGACCCAGA
CAGAGGAGGAAATGACCAGATATGTCCAGGAGCTCCAAAAGCATCAGGAGACAGCTGAAA
AGACCAAGAGAGTGAGCACCAAAGAGATCTAATGAGGAGGCATCTGGGAATGGTGTCTAG
AGCCTGGCACCTTCTCTTCCACTTCAGCGCTGAGTCCAGTATACGCAAGTGTCTGCTACA
ATCGCCAAATCACCAGTATTTGCTTGTATAGCAATGAGTTTTATTTTGTCTATTTGTTTT
GCAATAGAGGAAATGGGGGTGGCTGGCTAGGAGGGAGAGGGCCATAGCCTTCATTTCTAG
GAGCGCTTTGAGAGAAACTGTAAATGATGCTCAGGGGCTGGAGACAAGTTAAGAAACTGC
ATCAGGGTTGGGAGAGTAGTGGACCCAGATCTGGAACACTTCTGAGTCCACCACAGCTTT
GATCATGCTGTAGGGAGTACAGGCAATGAGAAAGAACTTAGCAGGCTGTCCCCAGAGGAA
GGCTTTGGGAAAGTCAGTAGAGAAGACTGCATTCTGCTTCCAGCCCTTCCTGCTGCCATC
AGCGTAACAGATCTCCAGCATCTGTGCTTCTCCTCATGGCCCCAACCACTGGCTCTAGAT
ACATGGCCATCTTGCTAGTTACCCAATGACTGCAGGGTGCACCCAAATAATGCAGGTACT
TGTAGACTTTGAGCCCCTTAGAGACCTAACCAAATTTTAAAAATACTTGTTACCAAAGGT
GCTATTTTTCTGTAAACTTTTTTTTGGCAAGTCGATTTCACTCTTCAATTATTATCATTG
TATTATTGTTGTTGTTGTTTAATATTTTTATTTTCTTGACTAGAATTAAGCTTTTGTAAT
TATTTTTCATTAGTCCTACCATTTTAGAGGTGGGAGAGTTTGGGGTCCTTCTTGGTACAG
GGACTGCTATTACCCAGACTCCCCTCACCCTGCCACATACTAGATGTAGCCCAGAATTTG
CCCCCTGGCTTCCAGTGGGTCAGCAGCCTGCCAGAGAAGCAGGGTGTGCCTCGAACAGAA
GCCAGGAGAATTTTCTCTGTATAAAGCTTTTAAGATCCAAAAAGCAAATTTGTTTTCATT
TATTCTGATAGATTTATGCAAATCAGTATCCCAAAGAATGGAGACAAGTGCAGCTAAGCA
AGGCTTCGCTGTCCCAGCCTGTCAACATGCCCATTGATCTTCCACTAACGAGGACAGTGA
CTCTGGCCCTGTCTCTTCCTATTTCTGGGCCTCAGTTTCCTCAGTGAGCAGGTAGGAATG
CATTAAACTGTTGATCTGAGAAATTGTAAATTCTGTGGTTCTGATCATTGGTCAAGAAGG
AGACAAGTTCCTATGATTCTCCTCCTTCTCCTTAGGATAAATGAAACCTTACTGTCATAA
CAAGTATGGTCAGACAGCCAAAAACAAGATGACCAAATTTAACCTCAGTCTGAATGGCCC
CACGGGCTGTGCTGTGATGTAGAGCCCTCAGGTAAAGCCTGCTCAGAACTGTGAGAAGGA
GAAGCACTCCACTCTGTCCTTACTTGTACATTTCATCTTTAACCTCAGGAGCAGAAATGG
CTTTCCTATTAGAGATGAGGACAAAAGAAGGTTTCCCATTTCGAGGGAAGGCAAAAATTG
GAATTCAACTCAACACTGTGACAGTGTCTTTTTGGCTTCTGTGATAATTAACCCCACTCA
GTACCGTGTTTAAGATGCATTTGGAATAACAAAATTATAAACTTCACATAAGATCTCATT
TTCAGGAAGCAGATTATAGACCACCAGAGGGAAGTAACGTAGGCTATATTGCACAGGCAG
CTCTGAAAAAGTTGTGCTGAAAATGGAATTTGTTCTAAACAAGTTTCCTTTTTCTCCTTT
GAAAGACCATTCTCCACTTTGTTTAGAATTCTGAGCTTTTATAAACCATCCCACTTGAAA
GCTCTCTTCGAACCCCACTTGTGTGGTCTCAAATGCATCTCCCTGTCAAAATACCTTGGA
GAACTCCCAACAGCACACCTTGATCCACTTTTGCCAGTCCTTGGTCACTATTGAAGAGAG
GGCCGAAGTACCATTTGGTTTAAAGCAAGAAGGCAGAGTGTCTCCTCACCAGTTACATTT
AGGTCAGTGGTTGCCCTCCAAGATGACCCCATCCTGCAACACTGAATTCCCAAGAGCAAA
TCTGCATTCCTCCTGTAAATAGGGAAGCTACTGTCTGCACCATAGACTCACGTGATCTAA
CAGTCATTCATGGAAAGCTGCTAAATAGCCTAGTTTGGGGAGTTTTGCATGGAGCTTTGC
ATGGAGCAAATAAACAGGATTAAAACAGGTTCAGTTCCTCCAACTCTCTAAAAGCATCGG
GCCTAGACGACAAGCTTCCTTGCGCTTTCTCTGTGTGTATGTTTTTTATAAACATATTAC
AGCATCTGTTAAGATTCAGTGTCCATGGAAACCTTCTCAAATGCCATGACTCTGGACTCC
ATCACTCTTTGGAAAGCAGGGCTCCTCCACCTGCTAATAAGCCCATGTGGACCAGTCTGA
ATGTCTTTCCTTTACACTTATGTTTTTAAATAGTCAAATTTCAAGAAACAGTTTGGACAG
GTTTCTGTTGCCTGTGTGTTTGTGAAATGTATTTGTATTTAGTAGGCTTCCATATTTCAT
TTAACTTGTTTTTGTAACTCCTGATTCTTTTTTGGATACTATTGATAAATAAAGAAATTA
AAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12658309|gb|AAK01083.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12658309|gb|AAK01083.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               325-484, + strand, RNAz p=0.935518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-484, + strand, RNAz p=0.935518

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007085, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007085, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-106, gnl|bosTau2|chr1 (30676743-30676640)
               

               
               1-106, gnl|Hg17|chr3 (121604434-121604316)
               

               
               1-106, gnl|Mm7|chr16 (37537514-37537620)
               


               
               166-2829, gnl|bosTau2|chr1 (30671980-30669347)
               

               
               166-2829, gnl|Hg17|chr3 (121598535-121595813)
               

               
               166-2829, gnl|Mm7|chr16 (37542259-37544904)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-106, gnl|bosTau2|chr1 (30676743-30676640)
               

               
               1-106, gnl|Hg17|chr3 (121604434-121604316)
               

               
               1-106, gnl|Mm7|chr16 (37537514-37537620)
               


               
               166-2829, gnl|bosTau2|chr1 (30671980-30669347)
               

               
               166-2829, gnl|Hg17|chr3 (121598535-121595813)
               

               
               166-2829, gnl|Mm7|chr16 (37542259-37544904)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

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               gul (2.30865)
               

               
               fat (2.21141)
               

               
               jca (2.05128)
               

               
               eru (2.04082)
               

               
               csk (1.97044)
               

               
               ski (1.90756)
               

               
               aor (1.75747)
               

               
               bla (1.74086)
               

               
               pla (1.47039)
               

               
               ctl (1.37762)
               

               
               amn (1.25313)
               

               
               ova (1.16219)
               

               
               sag (1.09629)
               

               
               pro (1.02407)
               

               
               hea (1.02249)
               

               
               rec (0.865351)
               

               
               cty (0.832639)
               

               
               nco (0.808669)
               

               
               tra (0.738552)
               

               
               mcp (0.682594)
               

               
               sug (0.636456)
               

               
               nca (0.547495)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               eep (0.490256)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               thg (0.380373)
               

               
               ese (0.379507)
               

               
               spc (0.340097)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (2.30865)
               

               
               fat (2.21141)
               

               
               jca (2.05128)
               

               
               eru (2.04082)
               

               
               csk (1.97044)
               

               
               ski (1.90756)
               

               
               aor (1.75747)
               

               
               bla (1.74086)
               

               
               pla (1.47039)
               

               
               ctl (1.37762)
               

               
               amn (1.25313)
               

               
               ova (1.16219)
               

               
               sag (1.09629)
               

               
               pro (1.02407)
               

               
               hea (1.02249)
               

               
               rec (0.865351)
               

               
               cty (0.832639)
               

               
               nco (0.808669)
               

               
               tra (0.738552)
               

               
               mcp (0.682594)
               

               
               sug (0.636456)
               

               
               nca (0.547495)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               eep (0.490256)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               thg (0.380373)
               

               
               ese (0.379507)
               

               
               spc (0.340097)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1-106, gnl\|bosTau2\|chr1 (30676743-30676640)
	1-106, gnl\|Hg17\|chr3 (121604434-121604316)
	1-106, gnl\|Mm7\|chr16 (37537514-37537620)

	166-2829, gnl\|bosTau2\|chr1 (30671980-30669347)
	166-2829, gnl\|Hg17\|chr3 (121598535-121595813)
	166-2829, gnl\|Mm7\|chr16 (37542259-37544904)

	gul (2.30865)
	fat (2.21141)
	jca (2.05128)
	eru (2.04082)
	csk (1.97044)
	ski (1.90756)
	aor (1.75747)
	bla (1.74086)
	pla (1.47039)
	ctl (1.37762)
	amn (1.25313)
	ova (1.16219)
	sag (1.09629)
	pro (1.02407)
	hea (1.02249)
	rec (0.865351)
	cty (0.832639)
	nco (0.808669)
	tra (0.738552)
	mcp (0.682594)
	sug (0.636456)
	nca (0.547495)
	fbs (0.526039)
	eye (0.511509)
	eep (0.490256)
	mgp (0.461361)
	lin (0.436808)
	spl (0.429553)
	ssp (0.406559)
	ste (0.405625)
	thg (0.380373)
	ese (0.379507)
	spc (0.340097)
	mga (0.32041)
	sme (0.305437)
	cte (0.29274)
	liv (0.292569)
	pty (0.285429)
	hlv (0.278513)
	fce (0.271592)
	clu (0.239292)
	pgl (0.236967)
	med (0.232504)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	eje (0.197668)
	ldo (0.194005)
	duo (0.172801)
	cki (0.165235)
	tbr (0.154178)
	isp (0.150376)
	lnt (0.142308)
	che (0.136314)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ecc (0.115035)
	jej (0.0989218)