Non-Coding RNA Search

Ss1.1-rski0119_p24.5

Sequence:


               
               GATTTGCAAACTGGGCAACGACTCCCAGAAAGCCGTGAAGATCCTGCAGTCCTTGCCAGA
CTTAGACTCTTTACTAGTTCAGGATGTCGTGGGGGGCCTCATGGCCTGGGCTGCCAAAGT
CGATGGGACGTTTCCGCAGTACTGAGGTGGGTTGGTAGAGTCTGACCAGCGAAAAGCGTG
CGTTGCCATGCTACCTAAAGGTTTTTTTTTTTTTTTTCCCCATTAATTTATTTGCATTTT
TTTTCACTAATGTACGGAAGAGCCTGGGATTCTGCAATAGCTGTAAATACAGGGACTTTT
TTTTTTTGTCCCCGCCTATGCACCCCACAGCAGTGACAGCGGCTGGATCCTTAACCCGCT
GAGCCACCAACGAACTGCACGTGGACGTCTTTTATAAGGGACTTTTCAATTATAATTTAT
GGGATGATGTGGTTATTAATGGATTATAATACTGTTTTTGAGAACTGTCTTGTGTTTTCA
GAACTTGAATGGTGTCTCGAACAGGTGAGGTAAAAGGTGACCGGATTTTGTGTTTTGAAC
TGCCAATCATTTGCCTGTTCTCCCTTTTTTTGACCGCTCCCATGAAGAGCTCTTTAAATC
GTCCATTTTAATGCTTGGAAAGGTGTAGAAAACATACTGAATTGCTCACAGGTGATATAG
TTAAGATCAGCTTATTGCTTACTTAGGCATTCTTTGGATGTTATTTCCACTTAAAATTAC
AGAATATGTCCGAGAGAAATCAGTGCTCAAAGGTAAATTGTGAAAATAGTTAAACTAAAA
TTATGTGGGAAGTGGTCATTCTATTAAATATTTTGAATTAAAAGCCAAGTGAGAGATTTA
CAGTCTAGCAAGGTAGAAACCACCTTTGCAGTCCATCAGTTTAATACGTTGCTGATTTCT
TCTTAGAGTTAGTTTGTGGGTCCACCTTATGTTGTGCACATTTAGAATTTTTTTGGCTTT
ACCGTATGGCCAGGATGCCAAATCCTGAATTAAAGTGCAGTAATGAACATTTTTCTCTTC
TTCACAATTTTGGGTGAAAAACTTTGAATATTTGACTATTACTTGTTAATGCTTTACTGT
AGATAAATACCCTCTATCAGATTAAATAAATTTCTGGTTATAGTTTGAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTGCAAACTGGGCAACGACTCCCAGAAAGCCGTGAAGATCCTGCAGTCCTTGCCAGA
CTTAGACTCTTTACTAGTTCAGGATGTCGTGGGGGGCCTCATGGCCTGGGCTGCCAAAGT
CGATGGGACGTTTCCGCAGTACTGAGGTGGGTTGGTAGAGTCTGACCAGCGAAAAGCGTG
CGTTGCCATGCTACCTAAAGGTTTTTTTTTTTTTTTTCCCCATTAATTTATTTGCATTTT
TTTTCACTAATGTACGGAAGAGCCTGGGATTCTGCAATAGCTGTAAATACAGGGACTTTT
TTTTTTTGTCCCCGCCTATGCACCCCACAGCAGTGACAGCGGCTGGATCCTTAACCCGCT
GAGCCACCAACGAACTGCACGTGGACGTCTTTTATAAGGGACTTTTCAATTATAATTTAT
GGGATGATGTGGTTATTAATGGATTATAATACTGTTTTTGAGAACTGTCTTGTGTTTTCA
GAACTTGAATGGTGTCTCGAACAGGTGAGGTAAAAGGTGACCGGATTTTGTGTTTTGAAC
TGCCAATCATTTGCCTGTTCTCCCTTTTTTTGACCGCTCCCATGAAGAGCTCTTTAAATC
GTCCATTTTAATGCTTGGAAAGGTGTAGAAAACATACTGAATTGCTCACAGGTGATATAG
TTAAGATCAGCTTATTGCTTACTTAGGCATTCTTTGGATGTTATTTCCACTTAAAATTAC
AGAATATGTCCGAGAGAAATCAGTGCTCAAAGGTAAATTGTGAAAATAGTTAAACTAAAA
TTATGTGGGAAGTGGTCATTCTATTAAATATTTTGAATTAAAAGCCAAGTGAGAGATTTA
CAGTCTAGCAAGGTAGAAACCACCTTTGCAGTCCATCAGTTTAATACGTTGCTGATTTCT
TCTTAGAGTTAGTTTGTGGGTCCACCTTATGTTGTGCACATTTAGAATTTTTTTGGCTTT
ACCGTATGGCCAGGATGCCAAATCCTGAATTAAAGTGCAGTAATGAACATTTTTCTCTTC
TTCACAATTTTGGGTGAAAAACTTTGAATATTTGACTATTACTTGTTAATGCTTTACTGT
AGATAAATACCCTCTATCAGATTAAATAAATTTCTGGTTATAGTTTGAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-304, gnl|bosTau2|chr13 (59092016-59091725)
               

               
               1-304, gnl|Hg17|chr20 (49010016-49010302)
               


               
               950-1152, gnl|bosTau2|chr14 (43482818-43482611)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-304, gnl|bosTau2|chr13 (59092016-59091725)
               

               
               1-304, gnl|Hg17|chr20 (49010016-49010302)
               


               
               950-1152, gnl|bosTau2|chr14 (43482818-43482611)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

	1-304, gnl\|bosTau2\|chr13 (59092016-59091725)
	1-304, gnl\|Hg17\|chr20 (49010016-49010302)

	950-1152, gnl\|bosTau2\|chr14 (43482818-43482611)

	sin (0.349895)
	bfe (0.299715)
	ski (0.29347)
	mgp (0.230681)
	sag (0.182715)
	mgm (0.180343)
	nco (0.161734)
	lun (0.150489)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	ebs (0.118301)