Ss1.1-rski0120_d24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGACCGCTGATGACTTCAGACTCAAGTATGAGAATGAGCTGGCTCTGCACCAGAGCGTG GAAAGTGATGTCAATGGGCTACGCAGGGTTCTGGATGAGATCACCCTGTGCAGAACAGAC CTGGAGATTCAGTACGAAACCCTAAGTGAAGAGCTGACGTACCTCAAGAAGAACCATAAA GAGGAAATGCAAGTTCTGCAGTGCGCGGCCGGAGGCAACGTGAACGTGGAGATGAACGCG GCGCCCGGTGTGGACCTCACAGTTCTGCTGAACAACATGCGGGCGGAGTACGAAGCCCTG GCCGAGCAGAACCGCAGGGATGCAGAGGCCTGGTTCAATGAAAAGAGCGCTTCGCTGCAA CAGCAGATCTCTGAGGACGCGGGCGCCACCACCTCGGCCCGGAACGAGTTGACTGAGATG AAGCGCAACCTCCAAACCCTGGAAATTGAACTTCAGTCTCTCCTAGCCACGAAACACTCC CTGGAGTGCTCCTTGAGCGAGACGGAGGGCAACTACTGTGCGCAGCTGGCCCAGATCCAG GCTCAGATCGGGGCCCTGGAGGAGCAGCTGCACCAGGTCAGGACTGAGACCGAGGGCCAG AAACTGGAGTACGAGCAGCTCCTGGACATCAAGGTCCACCTGGAAAAAGAAATTGAGACC TACTGCCTCCTCATCGGTGGAGAGGAAGGGGCTTGCAAGTCTGGAGGTTACAAGTCTAAA GATTACGGATCCGGAAACATGGGAGCCCAACTCAAAGATCCAATCAAAGCCATAGTGGTC AAGAAAGTTCTTGAGGAGGTAGACCAACGCAGCAAAATACTTACCACCAGGCTCCACTCT CTGGAAGAGAAATCTCAAAGCAATTAAATTGATACATAAGAAAGAGCGTATGCCACATAC TCTCGGAGAAGAGAAGGCGTCATATATCTGTCTGGAAAAATGAGCAAGTCTAAGGAAAAA ATCTGTCTTGGTGTCTTTCTATTACTGAAATATAATCTCTATCTGGGCAATCAATAGTAT ATTTTCCCGTTCATCTGGAAGAACAGTCACATACAAATATGATGACTCATTTGATTACCT TCCAGAAAGTGTTGTCAATTCTTTGTAGTCAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGACCGCTGATGACTTCAGACTCAAGTATGAGAATGAGCTGGCTCTGCACCAGAGCGTG GAAAGTGATGTCAATGGGCTACGCAGGGTTCTGGATGAGATCACCCTGTGCAGAACAGAC CTGGAGATTCAGTACGAAACCCTAAGTGAAGAGCTGACGTACCTCAAGAAGAACCATAAA GAGGAAATGCAAGTTCTGCAGTGCGCGGCCGGAGGCAACGTGAACGTGGAGATGAACGCG GCGCCCGGTGTGGACCTCACAGTTCTGCTGAACAACATGCGGGCGGAGTACGAAGCCCTG GCCGAGCAGAACCGCAGGGATGCAGAGGCCTGGTTCAATGAAAAGAGCGCTTCGCTGCAA CAGCAGATCTCTGAGGACGCGGGCGCCACCACCTCGGCCCGGAACGAGTTGACTGAGATG AAGCGCAACCTCCAAACCCTGGAAATTGAACTTCAGTCTCTCCTAGCCACGAAACACTCC CTGGAGTGCTCCTTGAGCGAGACGGAGGGCAACTACTGTGCGCAGCTGGCCCAGATCCAG GCTCAGATCGGGGCCCTGGAGGAGCAGCTGCACCAGGTCAGGACTGAGACCGAGGGCCAG AAACTGGAGTACGAGCAGCTCCTGGACATCAAGGTCCACCTGGAAAAAGAAATTGAGACC TACTGCCTCCTCATCGGTGGAGAGGAAGGGGCTTGCAAGTCTGGAGGTTACAAGTCTAAA GATTACGGATCCGGAAACATGGGAGCCCAACTCAAAGATCCAATCAAAGCCATAGTGGTC AAGAAAGTTCTTGAGGAGGTAGACCAACGCAGCAAAATACTTACCACCAGGCTCCACTCT CTGGAAGAGAAATCTCAAAGCAATTAAATTGATACATAAGAAAGAGCGTATGCCACATAC TCTCGGAGAAGAGAAGGCGTCATATATCTGTCTGGAAAAATGAGCAAGTCTAAGGAAAAA ATCTGTCTTGGTGTCTTTCTATTACTGAAATATAATCTCTATCTGGGCAATCAATAGTAT ATTTTCCCGTTCATCTGGAAGAACAGTCACATACAAATATGATGACTCATTTGATTACCT TCCAGAAAGTGTTGTCAATTCTTTGTAGTCAATAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 221-345, - strand, RNAz p=0.835064 | |
| 451-690, - strand, RNAz p=0.96961 | |
| 990-1098, - strand, RNAz p=0.990316 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 221-345, - strand, RNAz p=0.835064 | |
| 451-690, - strand, RNAz p=0.96961 | |
| 990-1098, - strand, RNAz p=0.990316 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 182-345, gnl|bosTau2|chr19 (33931157-33931320) | |
| 182-345, gnl|canFam2|chr9 (25273468-25273109) | |
| 182-345, gnl|danRer3|chr19 (1145167-1145541) | |
| 182-345, gnl|dasNov1|scaffold_74658 (2529-2889) | |
| 182-345, gnl|echTel1|scaffold_319302 (47177-46818) | |
| 182-345, gnl|fr1|chrUn (253388019-253387640) | |
| 182-345, gnl|galGal2|chr27_random (571605-571211) | |
| 182-345, gnl|hg17|chr17 (36160711-36161075) | |
| 182-345, gnl|Hg17|chr17 (36161106-36160943) | |
| 182-345, gnl|loxAfr1|scaffold_19478 (38904-38542) | |
| 182-345, gnl|mm7|chr11 (99427083-99427440) | |
| 182-345, gnl|Mm7|chr11 (99427471-99427308) | |
| 182-345, gnl|monDom2|scaffold_18 (50173166-50173545) | |
| 182-345, gnl|oryCun1|scaffold_203191 (38464-38102) | |
| 182-345, gnl|panTro1|chr19 (39407957-39408321) | |
| 182-345, gnl|rheMac2|chr16 (50868628-50868991) | |
| 182-345, gnl|rn3|chr10 (88234020-88234376) | |
| 182-345, gnl|tetNig1|chr18 (5133275-5133663) | |
| 182-345, gnl|xenTro1|scaffold_574 (355644-355184) | |
| 451-690, gnl|bosTau2|chr19 (33933264-33933501) | |
| 451-690, gnl|Hg17|chr17 (36160396-36160157) | |
| 451-690, gnl|Mm7|chr11 (99426514-99426276) | |
| 756-1116, gnl|bosTau2|chr19 (33934778-33935148) | |
| 756-1116, gnl|canFam2|chr9 (25275935-25275595) | |
| 756-1116, gnl|dasNov1|scaffold_74658 (931-1274) | |
| 756-1116, gnl|echTel1|scaffold_319302 (49235-48832) | |
| 756-1116, gnl|hg17|chr17 (36157791-36158123) | |
| 756-1116, gnl|Hg17|chr17 (36158166-36157818) | |
| 756-1116, gnl|loxAfr1|scaffold_19478 (40949-40601) | |
| 756-1116, gnl|mm7|chr11 (99424875-99425211) | |
| 756-1116, gnl|Mm7|chr11 (99425254-99424901) | |
| 756-1116, gnl|monDom2|scaffold_18 (50166477-50166907) | |
| 756-1116, gnl|oryCun1|scaffold_203191 (41302-40971) | |
| 756-1116, gnl|panTro1|chr19 (39405043-39405375) | |
| 756-1116, gnl|rheMac2|chr16 (50865704-50866041) | |
| 756-1116, gnl|rn3|chr10 (88231651-88232019) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-345, gnl|bosTau2|chr19 (33931157-33931320) | |
| 182-345, gnl|canFam2|chr9 (25273468-25273109) | |
| 182-345, gnl|danRer3|chr19 (1145167-1145541) | |
| 182-345, gnl|dasNov1|scaffold_74658 (2529-2889) | |
| 182-345, gnl|echTel1|scaffold_319302 (47177-46818) | |
| 182-345, gnl|fr1|chrUn (253388019-253387640) | |
| 182-345, gnl|galGal2|chr27_random (571605-571211) | |
| 182-345, gnl|hg17|chr17 (36160711-36161075) | |
| 182-345, gnl|Hg17|chr17 (36161106-36160943) | |
| 182-345, gnl|loxAfr1|scaffold_19478 (38904-38542) | |
| 182-345, gnl|mm7|chr11 (99427083-99427440) | |
| 182-345, gnl|Mm7|chr11 (99427471-99427308) | |
| 182-345, gnl|monDom2|scaffold_18 (50173166-50173545) | |
| 182-345, gnl|oryCun1|scaffold_203191 (38464-38102) | |
| 182-345, gnl|panTro1|chr19 (39407957-39408321) | |
| 182-345, gnl|rheMac2|chr16 (50868628-50868991) | |
| 182-345, gnl|rn3|chr10 (88234020-88234376) | |
| 182-345, gnl|tetNig1|chr18 (5133275-5133663) | |
| 182-345, gnl|xenTro1|scaffold_574 (355644-355184) | |
| 451-690, gnl|bosTau2|chr19 (33933264-33933501) | |
| 451-690, gnl|Hg17|chr17 (36160396-36160157) | |
| 451-690, gnl|Mm7|chr11 (99426514-99426276) | |
| 756-1116, gnl|bosTau2|chr19 (33934778-33935148) | |
| 756-1116, gnl|canFam2|chr9 (25275935-25275595) | |
| 756-1116, gnl|dasNov1|scaffold_74658 (931-1274) | |
| 756-1116, gnl|echTel1|scaffold_319302 (49235-48832) | |
| 756-1116, gnl|hg17|chr17 (36157791-36158123) | |
| 756-1116, gnl|Hg17|chr17 (36158166-36157818) | |
| 756-1116, gnl|loxAfr1|scaffold_19478 (40949-40601) | |
| 756-1116, gnl|mm7|chr11 (99424875-99425211) | |
| 756-1116, gnl|Mm7|chr11 (99425254-99424901) | |
| 756-1116, gnl|monDom2|scaffold_18 (50166477-50166907) | |
| 756-1116, gnl|oryCun1|scaffold_203191 (41302-40971) | |
| 756-1116, gnl|panTro1|chr19 (39405043-39405375) | |
| 756-1116, gnl|rheMac2|chr16 (50865704-50866041) | |
| 756-1116, gnl|rn3|chr10 (88231651-88232019) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ski (3.66838) | |
| csk (0.844476) | |
| nep (0.36785) | |
| fco (0.157208) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (3.66838) | |
| csk (0.844476) | |
| nep (0.36785) | |
| fco (0.157208) |