Ss1.1-rski0121_b7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCCCTCCCGCTCCAACCGGAGACCCCAGGCGCCGCCAGCCCACCACCCCAGCCTCCC GGGCGCCGTGGAATCCTCCCGACCTCGCGGCCAACTCTTGGACATGGCGACCCCCACCGG ACCCCCGGTGTCCTGTCCCAAGGCCGCCGTTGCTCGCGCGCTCCTGCTTGGCTGGGTCCT CGTCCAGGTGGCTGGAGCCACAGGCACTACAGATGTAATTGTAGCGTATAACTTAACTTG GAAGTCAACTAATTTCAAGACCATTTTGGAGTGGGAACCCAAACCCATTAATTATGTCTA CACTGTTCAGATAAGCCCTAGACTAGGAGATTGGAAAAACAAATGCTTCCACACGACAGA CACGGAGTGTGACGTCACGGACGAGATCATGAGGAACGTGAAGGAGACGTACGTGGCGCG GGTCCTGTCCTATCCTGCGGACACCGTGCTCACCGCTCAGGAGCCTCCGTTTACCAACTC GCCCCCCTTCACGCCCTACCTGGACACAAACCTCGGACAGCCAGTGATTCAGAGTTTTGA ACAAGTCGGGACAAAACTGAATGTGACCGTAGAAGCTGCTCGCACCTTAGTCAGGGTGAA CGGCACATTCCTCAGGCTGCGGGACGTTTTTGGCAAGGACTTGAATTATACCCTTTATTA CTGGAGAGCTTCGAGTACAGGAAAGAAAAAGGCCACGACCAACACTAATGAGTTTCTGAT TGACGTGGATAAAGGAGAAAACTACTGTTTCAGTGTTCAAGCAGTGATTCCATCCCGAAG AGTTAACCAGAAGAGTCCCGAAAGTCGCATTGAGTGCACCAGCCAAGAGAAAGCTGTGTC CCGAGAACTGTTCCTCATCGTTGGAGCGGTGGTGTTTGCGGTCATCGTCTTCGTCCTCGT CCTGTCTGTGTCTCTGTACAAGTGCAGGAAGGAGCGGGCAGGGCCCAGTGGGAAGGAGAA CGCGCCCCTCAATGTGGCGTGACGGTCTCGCGGTCAGACCTGCCAGCTCCGCGGCGCTCC TGTCGCGCGGGGACCAAGAGCTTTTGAGACAGTACAAGAGTAGAATCCATGGAAACACAA CCCCTGGGCTCCAGGAAGGCTCTTTTCTGACCTGGTCTCGCGACGAGCATTCTGGTTTCA ACATTAGCATTAGACACTTGGGCATGTAATGAGCGGTACAACCAATTCCGAGGGTTCTGA AATGTCTTTTAACACTACGGCACCTTTTGCACATAATATTCTTGAGACTGTATGTTCTCT ACATTGAGGTGAAGCCAGGTCATCCAAGGAAAAAGAAATGCCCTGGAAAACCCTGGGTGG ACTTGGGAAGAACTTCTGAGAAGGTGACTTCAAACCAACTGGGGGGAGGGAGCAAGATGG GAGTTGGTGGACTTTTCTAACAGGTCTGTCCTTGTGTGACGTGGTATTGAGGGGTTTTGT TTCATTTTGAGTACTTTTGGAGGTTCAGAACACTTAGCAAAACTTTTATATGAATGTGTT ACACGCGGCAGCCTTGTATCGGGGGCACATTCCTAATCTGCATTACAGTTTAGCACTTTA ACTGACCTGAAGGCTGTTGATGAAACACGTGACAGCTCACCCTTCTGTTATAAGACTGCC AACAACCTACACAGCTTAAGGTACTTCAAGGTTGATAGTCAACATTGTGTTTATTTATAT ACTTTTTAAAAGGTTTTCTATATGGGGTTTTCTATTTATAGAGGCAAACTGTTCTGTTTG TATATATTGAGATAATTTATTTAATATACTTTTATATAAATAAAGGTGACTGGATATTGT GAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCCCTCCCGCTCCAACCGGAGACCCCAGGCGCCGCCAGCCCACCACCCCAGCCTCCC GGGCGCCGTGGAATCCTCCCGACCTCGCGGCCAACTCTTGGACATGGCGACCCCCACCGG ACCCCCGGTGTCCTGTCCCAAGGCCGCCGTTGCTCGCGCGCTCCTGCTTGGCTGGGTCCT CGTCCAGGTGGCTGGAGCCACAGGCACTACAGATGTAATTGTAGCGTATAACTTAACTTG GAAGTCAACTAATTTCAAGACCATTTTGGAGTGGGAACCCAAACCCATTAATTATGTCTA CACTGTTCAGATAAGCCCTAGACTAGGAGATTGGAAAAACAAATGCTTCCACACGACAGA CACGGAGTGTGACGTCACGGACGAGATCATGAGGAACGTGAAGGAGACGTACGTGGCGCG GGTCCTGTCCTATCCTGCGGACACCGTGCTCACCGCTCAGGAGCCTCCGTTTACCAACTC GCCCCCCTTCACGCCCTACCTGGACACAAACCTCGGACAGCCAGTGATTCAGAGTTTTGA ACAAGTCGGGACAAAACTGAATGTGACCGTAGAAGCTGCTCGCACCTTAGTCAGGGTGAA CGGCACATTCCTCAGGCTGCGGGACGTTTTTGGCAAGGACTTGAATTATACCCTTTATTA CTGGAGAGCTTCGAGTACAGGAAAGAAAAAGGCCACGACCAACACTAATGAGTTTCTGAT TGACGTGGATAAAGGAGAAAACTACTGTTTCAGTGTTCAAGCAGTGATTCCATCCCGAAG AGTTAACCAGAAGAGTCCCGAAAGTCGCATTGAGTGCACCAGCCAAGAGAAAGCTGTGTC CCGAGAACTGTTCCTCATCGTTGGAGCGGTGGTGTTTGCGGTCATCGTCTTCGTCCTCGT CCTGTCTGTGTCTCTGTACAAGTGCAGGAAGGAGCGGGCAGGGCCCAGTGGGAAGGAGAA CGCGCCCCTCAATGTGGCGTGACGGTCTCGCGGTCAGACCTGCCAGCTCCGCGGCGCTCC TGTCGCGCGGGGACCAAGAGCTTTTGAGACAGTACAAGAGTAGAATCCATGGAAACACAA CCCCTGGGCTCCAGGAAGGCTCTTTTCTGACCTGGTCTCGCGACGAGCATTCTGGTTTCA ACATTAGCATTAGACACTTGGGCATGTAATGAGCGGTACAACCAATTCCGAGGGTTCTGA AATGTCTTTTAACACTACGGCACCTTTTGCACATAATATTCTTGAGACTGTATGTTCTCT ACATTGAGGTGAAGCCAGGTCATCCAAGGAAAAAGAAATGCCCTGGAAAACCCTGGGTGG ACTTGGGAAGAACTTCTGAGAAGGTGACTTCAAACCAACTGGGGGGAGGGAGCAAGATGG GAGTTGGTGGACTTTTCTAACAGGTCTGTCCTTGTGTGACGTGGTATTGAGGGGTTTTGT TTCATTTTGAGTACTTTTGGAGGTTCAGAACACTTAGCAAAACTTTTATATGAATGTGTT ACACGCGGCAGCCTTGTATCGGGGGCACATTCCTAATCTGCATTACAGTTTAGCACTTTA ACTGACCTGAAGGCTGTTGATGAAACACGTGACAGCTCACCCTTCTGTTATAAGACTGCC AACAACCTACACAGCTTAAGGTACTTCAAGGTTGATAGTCAACATTGTGTTTATTTATAT ACTTTTTAAAAGGTTTTCTATATGGGGTTTTCTATTTATAGAGGCAAACTGTTCTGTTTG TATATATTGAGATAATTTATTTAATATACTTTTATATAAATAAAGGTGACTGGATATTGT GAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 33-204, gnl|bosTau2|chr3 (39305626-39305797) | |
| 33-204, gnl|canFam2|chr6 (57765155-57764302) | |
| 33-204, gnl|dasNov1|scaffold_12703 (5987-4971) | |
| 33-204, gnl|hg17|chr1 (94718219-94719277) | |
| 33-204, gnl|Hg17|chr1 (94719268-94719113) | |
| 33-204, gnl|loxAfr1|scaffold_3407 (116229-115161) | |
| 33-204, gnl|mm7|chr3 (121493450-121492450) | |
| 33-204, gnl|Mm7|chr3 (121492444-121492591) | |
| 33-204, gnl|panTro1|chr1 (93705827-93706885) | |
| 33-204, gnl|rheMac2|chr1 (97541675-97542732) | |
| 33-204, gnl|rn3|chr2 (218335104-218334155) | |
| 314-504, gnl|bosTau2|chr3 (39310973-39311163) | |
| 314-504, gnl|canFam2|chr6 (57770003-57769738) | |
| 314-504, gnl|dasNov1|scaffold_12703 (10280-9988) | |
| 314-504, gnl|hg17|chr1 (94713514-94713801) | |
| 314-504, gnl|Hg17|chr1 (94713743-94713544) | |
| 314-504, gnl|loxAfr1|scaffold_3407 (121153-120865) | |
| 314-504, gnl|mm7|chr3 (121498371-121498072) | |
| 314-504, gnl|Mm7|chr3 (121498123-121498340) | |
| 314-504, gnl|monDom2|scaffold_0 (26175061-26174787) | |
| 314-504, gnl|oryCun1|scaffold_204264 (80148-80419) | |
| 314-504, gnl|panTro1|chr1 (93701121-93701408) | |
| 314-504, gnl|rn3|chr2 (218340303-218340006) | |
| 507-685, gnl|bosTau2|chr3 (39313337-39313515) | |
| 507-685, gnl|canFam2|chr6 (57772022-57772198) | |
| 507-685, gnl|canFam2|chr6 (57772231-57771954) | |
| 507-685, gnl|dasNov1|scaffold_12703 (12099-12275) | |
| 507-685, gnl|dasNov1|scaffold_12703 (12307-12028) | |
| 507-685, gnl|hg17|chr1 (94710637-94710916) | |
| 507-685, gnl|Hg17|chr1 (94710845-94710667) | |
| 507-685, gnl|hg17|chr8 (51566312-51566481) | |
| 507-685, gnl|loxAfr1|scaffold_3407 (123298-123474) | |
| 507-685, gnl|loxAfr1|scaffold_3407 (123508-123231) | |
| 507-685, gnl|mm7|chr3 (121500313-121500489) | |
| 507-685, gnl|mm7|chr3 (121500521-121500243) | |
| 507-685, gnl|Mm7|chr3 (121500312-121500490) | |
| 507-685, gnl|monDom2|scaffold_0 (26178020-26177760) | |
| 507-685, gnl|oryCun1|scaffold_204264 (78661-78485) | |
| 507-685, gnl|oryCun1|scaffold_204264 (78453-78683) | |
| 507-685, gnl|panTro1|chr1 (93698450-93698277) | |
| 507-685, gnl|panTro1|chr1 (93698244-93698523) | |
| 507-685, gnl|rn3|chr2 (218342175-218342345) | |
| 507-685, gnl|rn3|chr2 (218342380-218342098) | |
| 844-1802, gnl|bosTau2|chr3 (39315445-39316444) | |
| 844-1802, gnl|Hg17|chr1 (94708175-94706893) | |
| 844-1802, gnl|Mm7|chr3 (121502892-121503833) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-204, gnl|bosTau2|chr3 (39305626-39305797) | |
| 33-204, gnl|canFam2|chr6 (57765155-57764302) | |
| 33-204, gnl|dasNov1|scaffold_12703 (5987-4971) | |
| 33-204, gnl|hg17|chr1 (94718219-94719277) | |
| 33-204, gnl|Hg17|chr1 (94719268-94719113) | |
| 33-204, gnl|loxAfr1|scaffold_3407 (116229-115161) | |
| 33-204, gnl|mm7|chr3 (121493450-121492450) | |
| 33-204, gnl|Mm7|chr3 (121492444-121492591) | |
| 33-204, gnl|panTro1|chr1 (93705827-93706885) | |
| 33-204, gnl|rheMac2|chr1 (97541675-97542732) | |
| 33-204, gnl|rn3|chr2 (218335104-218334155) | |
| 314-504, gnl|bosTau2|chr3 (39310973-39311163) | |
| 314-504, gnl|canFam2|chr6 (57770003-57769738) | |
| 314-504, gnl|dasNov1|scaffold_12703 (10280-9988) | |
| 314-504, gnl|hg17|chr1 (94713514-94713801) | |
| 314-504, gnl|Hg17|chr1 (94713743-94713544) | |
| 314-504, gnl|loxAfr1|scaffold_3407 (121153-120865) | |
| 314-504, gnl|mm7|chr3 (121498371-121498072) | |
| 314-504, gnl|Mm7|chr3 (121498123-121498340) | |
| 314-504, gnl|monDom2|scaffold_0 (26175061-26174787) | |
| 314-504, gnl|oryCun1|scaffold_204264 (80148-80419) | |
| 314-504, gnl|panTro1|chr1 (93701121-93701408) | |
| 314-504, gnl|rn3|chr2 (218340303-218340006) | |
| 507-685, gnl|bosTau2|chr3 (39313337-39313515) | |
| 507-685, gnl|canFam2|chr6 (57772022-57772198) | |
| 507-685, gnl|canFam2|chr6 (57772231-57771954) | |
| 507-685, gnl|dasNov1|scaffold_12703 (12099-12275) | |
| 507-685, gnl|dasNov1|scaffold_12703 (12307-12028) | |
| 507-685, gnl|hg17|chr1 (94710637-94710916) | |
| 507-685, gnl|Hg17|chr1 (94710845-94710667) | |
| 507-685, gnl|hg17|chr8 (51566312-51566481) | |
| 507-685, gnl|loxAfr1|scaffold_3407 (123298-123474) | |
| 507-685, gnl|loxAfr1|scaffold_3407 (123508-123231) | |
| 507-685, gnl|mm7|chr3 (121500313-121500489) | |
| 507-685, gnl|mm7|chr3 (121500521-121500243) | |
| 507-685, gnl|Mm7|chr3 (121500312-121500490) | |
| 507-685, gnl|monDom2|scaffold_0 (26178020-26177760) | |
| 507-685, gnl|oryCun1|scaffold_204264 (78661-78485) | |
| 507-685, gnl|oryCun1|scaffold_204264 (78453-78683) | |
| 507-685, gnl|panTro1|chr1 (93698450-93698277) | |
| 507-685, gnl|panTro1|chr1 (93698244-93698523) | |
| 507-685, gnl|rn3|chr2 (218342175-218342345) | |
| 507-685, gnl|rn3|chr2 (218342380-218342098) | |
| 844-1802, gnl|bosTau2|chr3 (39315445-39316444) | |
| 844-1802, gnl|Hg17|chr1 (94708175-94706893) | |
| 844-1802, gnl|Mm7|chr3 (121502892-121503833) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| ski (0.733676) | |
| sag (0.730861) | |
| pla (0.534688) | |
| amn (0.417711) | |
| ret (0.3862) | |
| sug (0.381874) | |
| bla (0.373042) | |
| cut (0.339847) | |
| isp (0.300752) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.733676) | |
| sag (0.730861) | |
| pla (0.534688) | |
| amn (0.417711) | |
| ret (0.3862) | |
| sug (0.381874) | |
| bla (0.373042) | |
| cut (0.339847) | |
| isp (0.300752) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) |