Non-Coding RNA Search

Ss1.1-rski0121_j7.5

Sequence:


               
               TATTTCAAACAAAAGGCAGCCAGTTACTAACTTCTGGTTGCTAGGTGTGGTCTCCTTTCA
AACTCTATAAAATGAGAAGCCCAAGGCTCCACTTCTAGTGTGAAACATTCAGAGGAGACT
CTTTAGTTCTTTGGAAGAAGGCAGGGGAAAAAGAAAATATCCTTCAAAAATGGCAATGGT
ATCTGAATTCCTTAAGCAGGCCTGGTTTATTGACAATGAAGAGCAAGAATACATTAAAAC
TGTGAAAGGATCCAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTATCCTACCTTCAATCC
ATCCTCAGATGTTGAAGCCTTGCATAAAGCGATAACAGTGAAAGGTGTGGATGAAGCAAC
CATCATTGAAATTCTAACTAAGAGAACCAATGCACAGCGTCAGCAGATCAAGGCAGCATA
TCTCCAGGAGAAAGGAAAGCCCCTGGATGAAGCTCTGAAGAAAGCCCTCACAGGTCACCT
TGAGGAAGTTGCTTTGGCTTTGCTGAAAACTCCAGCTCAGTTTGATGCTGATGAACTCCG
TGCTGCAATGAAGGGCCTTGGAACTGATGAAGACACTCTGAATGAAATTTTGGCATCAAG
AACTAACAGAGAAATCAGAGAAATTAACAGAGTGTATAAAGAAGAACTGAAGAGAGATCT
GGCTAAAGACATTACCTCAGACACATCTGGAGATTATCAGAAGGCTTTGCTTTCTCTTGC
TAAGGGTGACCGATCTGAGGACCTTGCTATAAATGATGACTTGGCTGATACAGATGCAAG
GGCTTTATATGAAGCAGGAGAACGAAGAAAAGGGACAGATTTGAATGTGTTCATTACCAT
TCTTACTACCAGAAGCTATCCTCATCTTCGCAGAGTGTTTCAGAAGTATTCCAAGTACAG
CAAGCATGACATGAACAAAGTTCTGGACCTGGAGTTGAAAGGTGACATCGAGAATTGCCT
TACAGTTGTTGTGAAGTGTGCTACAAGCAAACCAATGTTCTTTGCTGAGAAGCTTCATCA
GGCCATGAAGGGTATTGGAACTCGTCATAAGACACTGATCAGGATTATGGTTTCCCGTTC
TGAAATTGACATGAATGACATCAAAGCATGCTATCAGAAGTTGTATGGTATCTCCCTCTG
CCAAGCCATCCTGGATGAAACCAAGGGAGATTATGAAAAAATTCTGGTTGCTCTATGTGG
AGGAGACTAAACGTTCCTTTGATGATCTCAAGCTTTTTGATCAGCAGTCTTTTTAATCAT
ATCTTTTCATTCCGTATCATAGACTTAAATAAGAAAATTTCTTCAGCAGGATTATAGTCT
AGCTAACTCCTTTCTGAAAAATATAGCCTATAAATCATTTTTTGTATTACAACTTTATAT
AATAGAGATAAGTTTTTTAAAAAATATATTTACCCCAAACTATAGAACCCCATGAAGAGG
TTGTTCTAGTAACATTGTCTGAGGAATATGTTTATGTCACAGAAAATAAAATGATTTTAC
AGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTCAAACAAAAGGCAGCCAGTTACTAACTTCTGGTTGCTAGGTGTGGTCTCCTTTCA
AACTCTATAAAATGAGAAGCCCAAGGCTCCACTTCTAGTGTGAAACATTCAGAGGAGACT
CTTTAGTTCTTTGGAAGAAGGCAGGGGAAAAAGAAAATATCCTTCAAAAATGGCAATGGT
ATCTGAATTCCTTAAGCAGGCCTGGTTTATTGACAATGAAGAGCAAGAATACATTAAAAC
TGTGAAAGGATCCAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTATCCTACCTTCAATCC
ATCCTCAGATGTTGAAGCCTTGCATAAAGCGATAACAGTGAAAGGTGTGGATGAAGCAAC
CATCATTGAAATTCTAACTAAGAGAACCAATGCACAGCGTCAGCAGATCAAGGCAGCATA
TCTCCAGGAGAAAGGAAAGCCCCTGGATGAAGCTCTGAAGAAAGCCCTCACAGGTCACCT
TGAGGAAGTTGCTTTGGCTTTGCTGAAAACTCCAGCTCAGTTTGATGCTGATGAACTCCG
TGCTGCAATGAAGGGCCTTGGAACTGATGAAGACACTCTGAATGAAATTTTGGCATCAAG
AACTAACAGAGAAATCAGAGAAATTAACAGAGTGTATAAAGAAGAACTGAAGAGAGATCT
GGCTAAAGACATTACCTCAGACACATCTGGAGATTATCAGAAGGCTTTGCTTTCTCTTGC
TAAGGGTGACCGATCTGAGGACCTTGCTATAAATGATGACTTGGCTGATACAGATGCAAG
GGCTTTATATGAAGCAGGAGAACGAAGAAAAGGGACAGATTTGAATGTGTTCATTACCAT
TCTTACTACCAGAAGCTATCCTCATCTTCGCAGAGTGTTTCAGAAGTATTCCAAGTACAG
CAAGCATGACATGAACAAAGTTCTGGACCTGGAGTTGAAAGGTGACATCGAGAATTGCCT
TACAGTTGTTGTGAAGTGTGCTACAAGCAAACCAATGTTCTTTGCTGAGAAGCTTCATCA
GGCCATGAAGGGTATTGGAACTCGTCATAAGACACTGATCAGGATTATGGTTTCCCGTTC
TGAAATTGACATGAATGACATCAAAGCATGCTATCAGAAGTTGTATGGTATCTCCCTCTG
CCAAGCCATCCTGGATGAAACCAAGGGAGATTATGAAAAAATTCTGGTTGCTCTATGTGG
AGGAGACTAAACGTTCCTTTGATGATCTCAAGCTTTTTGATCAGCAGTCTTTTTAATCAT
ATCTTTTCATTCCGTATCATAGACTTAAATAAGAAAATTTCTTCAGCAGGATTATAGTCT
AGCTAACTCCTTTCTGAAAAATATAGCCTATAAATCATTTTTTGTATTACAACTTTATAT
AATAGAGATAAGTTTTTTAAAAAATATATTTACCCCAAACTATAGAACCCCATGAAGAGG
TTGTTCTAGTAACATTGTCTGAGGAATATGTTTATGTCACAGAAAATAAAATGATTTTAC
AGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28948618|pdb|1MCX|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28948618|pdb|1MCX|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1065-1179, - strand, RNAz p=0.86996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1065-1179, - strand, RNAz p=0.86996

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-1513, gnl|bosTau2|chr14 (22850444-22851849)
               

               
               103-1513, gnl|Hg17|chr9 (73002996-73014863)
               

               
               103-1513, gnl|Mm7|chr19 (20085259-20073919)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1513, gnl|bosTau2|chr14 (22850444-22851849)
               

               
               103-1513, gnl|Hg17|chr9 (73002996-73014863)
               

               
               103-1513, gnl|Mm7|chr19 (20085259-20073919)

Expressed library(ies): 47 entry(ies)

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Expressed library(ies): 47 entry(ies)

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               cbl (4.5919)
               

               
               ton (3.51)
               

               
               ret (2.57467)
               

               
               liv (2.19427)
               

               
               ski (1.61409)
               

               
               tra (1.6002)
               

               
               fat (1.32685)
               

               
               nbm (1.1919)
               

               
               jca (0.911681)
               

               
               amn (0.835422)
               

               
               ova (0.774793)
               

               
               nlu (0.766724)
               

               
               thg (0.760746)
               

               
               mcp (0.682594)
               

               
               nms (0.641574)
               

               
               nmm (0.531209)
               

               
               cty (0.5204)
               

               
               sug (0.509165)
               

               
               isp (0.451128)
               

               
               bfe (0.449573)
               

               
               spl (0.429553)
               

               
               nca (0.410621)
               

               
               nep (0.36785)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (4.5919)
               

               
               ton (3.51)
               

               
               ret (2.57467)
               

               
               liv (2.19427)
               

               
               ski (1.61409)
               

               
               tra (1.6002)
               

               
               fat (1.32685)
               

               
               nbm (1.1919)
               

               
               jca (0.911681)
               

               
               amn (0.835422)
               

               
               ova (0.774793)
               

               
               nlu (0.766724)
               

               
               thg (0.760746)
               

               
               mcp (0.682594)
               

               
               nms (0.641574)
               

               
               nmm (0.531209)
               

               
               cty (0.5204)
               

               
               sug (0.509165)
               

               
               isp (0.451128)
               

               
               bfe (0.449573)
               

               
               spl (0.429553)
               

               
               nca (0.410621)
               

               
               nep (0.36785)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	103-1513, gnl\|bosTau2\|chr14 (22850444-22851849)
	103-1513, gnl\|Hg17\|chr9 (73002996-73014863)
	103-1513, gnl\|Mm7\|chr19 (20085259-20073919)

	cbl (4.5919)
	ton (3.51)
	ret (2.57467)
	liv (2.19427)
	ski (1.61409)
	tra (1.6002)
	fat (1.32685)
	nbm (1.1919)
	jca (0.911681)
	amn (0.835422)
	ova (0.774793)
	nlu (0.766724)
	thg (0.760746)
	mcp (0.682594)
	nms (0.641574)
	nmm (0.531209)
	cty (0.5204)
	sug (0.509165)
	isp (0.451128)
	bfe (0.449573)
	spl (0.429553)
	nca (0.410621)
	nep (0.36785)
	gul (0.355177)
	fty (0.351679)
	rec (0.346141)
	lin (0.291206)
	lyg (0.266205)
	eep (0.245128)
	clu (0.239292)
	mgp (0.230681)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	pla (0.133672)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)