Non-Coding RNA Search

Ss1.1-rski0127_c20.5

Sequence:


               
               ATTCAGCATCTTCCCAAATCCTTATTTCTGCTCGAGTGTAAACCATGTAGGTCTTGGGAC
GGTCTTATGAGTAGAGCAGTTTTAAACTGCTCATCTACTTTGTTTTTTGTCTATCAGGAC
CATAGATCCCTCTCCTCTTTCTCCCTGGTCCCATCATCTGCTCTAAATCGTTCCTACTGA
AATAATGTTTGATTCTAAGACTGAAAGGACCTAACTTGCATGTTATACAGCAGGTAGTAA
GAAGAAAAGAGAATAAGTTGTTTTATGAATTTTGGGTATATGTGATTCACCTAAACTTCA
ATTATTTATCTGTATGTTATCTGCTACTAAAACATGGCAGAAGCTACTATTTTCAATTCT
CAGTGGTGGTCTTATTGAGACTTTTTCTATTTCAGAGGCTGAGCACAAGCCTCCATTGTT
TATAAGAAGAAATAAGATGAAAATACCTGTTACAGAGTATTTCAGCAAACCCAAGTCTCC
TCCCAGGCCTAAAACTCAGGAGAGGCTATCAACAAAACCAATGTCAGCAAGAAGCATACA
AGGATACAGTCTCTCCCCCCAAAGAGCATTTTATCCTCTAACATAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGCATCTTCCCAAATCCTTATTTCTGCTCGAGTGTAAACCATGTAGGTCTTGGGAC
GGTCTTATGAGTAGAGCAGTTTTAAACTGCTCATCTACTTTGTTTTTTGTCTATCAGGAC
CATAGATCCCTCTCCTCTTTCTCCCTGGTCCCATCATCTGCTCTAAATCGTTCCTACTGA
AATAATGTTTGATTCTAAGACTGAAAGGACCTAACTTGCATGTTATACAGCAGGTAGTAA
GAAGAAAAGAGAATAAGTTGTTTTATGAATTTTGGGTATATGTGATTCACCTAAACTTCA
ATTATTTATCTGTATGTTATCTGCTACTAAAACATGGCAGAAGCTACTATTTTCAATTCT
CAGTGGTGGTCTTATTGAGACTTTTTCTATTTCAGAGGCTGAGCACAAGCCTCCATTGTT
TATAAGAAGAAATAAGATGAAAATACCTGTTACAGAGTATTTCAGCAAACCCAAGTCTCC
TCCCAGGCCTAAAACTCAGGAGAGGCTATCAACAAAACCAATGTCAGCAAGAAGCATACA
AGGATACAGTCTCTCCCCCCAAAGAGCATTTTATCCTCTAACATAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47480326|gb|AAH69805.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47480326|gb|AAH69805.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-333, + strand, RNAz p=0.928592

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-333, + strand, RNAz p=0.928592

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-227, gnl|bosTau2|chr6 (9762443-9762207)
               

               
               1-227, gnl|canFam2|chr32 (24466554-24466715)
               

               
               1-227, gnl|dasNov1|scaffold_211152 (1008-1165)
               

               
               1-227, gnl|hg17|chr4 (100819835-100819971)
               

               
               1-227, gnl|Hg17|chr4 (100819834-100820049)
               

               
               1-227, gnl|mm7|chr3 (137973474-137973322)
               

               
               1-227, gnl|oryCun1|scaffold_166626 (5643-5485)
               

               
               1-227, gnl|panTro1|chr3 (117195604-117195740)
               

               
               1-227, gnl|rheMac2|chr5 (92512269-92512420)
               

               
               1-227, gnl|rn3|chr2 (235681971-235681820)
               


               
               229-585, gnl|bosTau2|chr6 (9761898-9761535)
               

               
               229-585, gnl|Hg17|chr4 (100820073-100820434)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr6 (9762443-9762207)
               

               
               1-227, gnl|canFam2|chr32 (24466554-24466715)
               

               
               1-227, gnl|dasNov1|scaffold_211152 (1008-1165)
               

               
               1-227, gnl|hg17|chr4 (100819835-100819971)
               

               
               1-227, gnl|Hg17|chr4 (100819834-100820049)
               

               
               1-227, gnl|mm7|chr3 (137973474-137973322)
               

               
               1-227, gnl|oryCun1|scaffold_166626 (5643-5485)
               

               
               1-227, gnl|panTro1|chr3 (117195604-117195740)
               

               
               1-227, gnl|rheMac2|chr5 (92512269-92512420)
               

               
               1-227, gnl|rn3|chr2 (235681971-235681820)
               


               
               229-585, gnl|bosTau2|chr6 (9761898-9761535)
               

               
               229-585, gnl|Hg17|chr4 (100820073-100820434)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ski (0.29347)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               pgl (0.118483)

	1-227, gnl\|bosTau2\|chr6 (9762443-9762207)
	1-227, gnl\|canFam2\|chr32 (24466554-24466715)
	1-227, gnl\|dasNov1\|scaffold_211152 (1008-1165)
	1-227, gnl\|hg17\|chr4 (100819835-100819971)
	1-227, gnl\|Hg17\|chr4 (100819834-100820049)
	1-227, gnl\|mm7\|chr3 (137973474-137973322)
	1-227, gnl\|oryCun1\|scaffold_166626 (5643-5485)
	1-227, gnl\|panTro1\|chr3 (117195604-117195740)
	1-227, gnl\|rheMac2\|chr5 (92512269-92512420)
	1-227, gnl\|rn3\|chr2 (235681971-235681820)

	229-585, gnl\|bosTau2\|chr6 (9761898-9761535)
	229-585, gnl\|Hg17\|chr4 (100820073-100820434)