Non-Coding RNA Search

Ss1.1-rski0127_p13.5

Sequence:


               
               AACACTATGCATATATAAATATTACATTGTTCATAGCTTTATTTGACTTATGGGTTTATA
CATTAGAATGAGTAGCTGTAGTTGTGTGGACATGAACAAACCAAGTTCCTTTCCTGGAAC
AGACACAGCGTACATTCTATAACTACGAGAGAGGAAAACGTCTTGTGTGACTGCTCTTTT
TACCATCAGCGTTTTCCATCCAAAGCACACATTGGGCTGTATAGTAAGGCAGAGGGAGAA
CACAACTGAATAATGATGTTCTTTTTTCATCAGTCTCTTAAGAGCCATCCTGGGGAATTG
ATTCCTAACAGTCCACTGCTAGGAATTCTCTCACTCTTTTGAGCCAAATCGGTAATGTTA
AATGATCGATGCTCTCAATTGTGGTCCAGAGTTTTCAATAAAACTCAAGAGGCGGATTTT
GGGAGTACATGGTGAAGTGAACATCTTGATGTCTTTCGTGGTGTCAGAGATGATATTTAA
CATTTTAGAATCCATGTGCTACCTATCTGGGCTTGACTCCTTCCGTGAAGACTTTTGGTG
TGGCTGCGTCATCTGAGCGCTATAGATCAGATTTGCTTTGGAAACACTGTACTGTACAGG
GACTATGCATTAAGCAGAAAGATAGTTTCTCTGAACTACTGTAACCTTACATTGGAGACT
GCTTCTGTTGAGCCTCCTTTCCCTAATCCCCCACCCACTTCATGTAAATGTCTTGATGAG
AGATGATATGGATGAGTATTTCGTATGATTAAATCAAACCGTATAGGACCTCCTCTCCCA
CCCATTACACAGTTGATGCCTGAAAGAATGTTGTGGGGAGAACTGAACACCCTACTTGTA
TTTTTTAAGTTTCTTTTGTGAAAGATTTTTTAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACTATGCATATATAAATATTACATTGTTCATAGCTTTATTTGACTTATGGGTTTATA
CATTAGAATGAGTAGCTGTAGTTGTGTGGACATGAACAAACCAAGTTCCTTTCCTGGAAC
AGACACAGCGTACATTCTATAACTACGAGAGAGGAAAACGTCTTGTGTGACTGCTCTTTT
TACCATCAGCGTTTTCCATCCAAAGCACACATTGGGCTGTATAGTAAGGCAGAGGGAGAA
CACAACTGAATAATGATGTTCTTTTTTCATCAGTCTCTTAAGAGCCATCCTGGGGAATTG
ATTCCTAACAGTCCACTGCTAGGAATTCTCTCACTCTTTTGAGCCAAATCGGTAATGTTA
AATGATCGATGCTCTCAATTGTGGTCCAGAGTTTTCAATAAAACTCAAGAGGCGGATTTT
GGGAGTACATGGTGAAGTGAACATCTTGATGTCTTTCGTGGTGTCAGAGATGATATTTAA
CATTTTAGAATCCATGTGCTACCTATCTGGGCTTGACTCCTTCCGTGAAGACTTTTGGTG
TGGCTGCGTCATCTGAGCGCTATAGATCAGATTTGCTTTGGAAACACTGTACTGTACAGG
GACTATGCATTAAGCAGAAAGATAGTTTCTCTGAACTACTGTAACCTTACATTGGAGACT
GCTTCTGTTGAGCCTCCTTTCCCTAATCCCCCACCCACTTCATGTAAATGTCTTGATGAG
AGATGATATGGATGAGTATTTCGTATGATTAAATCAAACCGTATAGGACCTCCTCTCCCA
CCCATTACACAGTTGATGCCTGAAAGAATGTTGTGGGGAGAACTGAACACCCTACTTGTA
TTTTTTAAGTTTCTTTTGTGAAAGATTTTTTAATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               353-451, + strand, RNAz p=0.533172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-451, + strand, RNAz p=0.533172

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr22 (26352180-26351318)
               

               
               1-876, gnl|Hg17|chr3 (65315168-65314286)
               

               
               1-876, gnl|Mm7|chr6 (93764467-93763600)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr22 (26352180-26351318)
               

               
               1-876, gnl|Hg17|chr3 (65315168-65314286)
               

               
               1-876, gnl|Mm7|chr6 (93764467-93763600)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               pgl (0.118483)

	1-876, gnl\|bosTau2\|chr22 (26352180-26351318)
	1-876, gnl\|Hg17\|chr3 (65315168-65314286)
	1-876, gnl\|Mm7\|chr6 (93764467-93763600)

	fcc (0.197785)
	aor (0.195274)
	fbs (0.175346)
	ski (0.146735)
	pgl (0.118483)