Non-Coding RNA Search

Ss1.1-rski0130_i20.5

Sequence:


               
               TATTAATAATTTAGGTATCATATTAGCTGAATACTATCCTCTATTACGTAACCTAATATA
CTGTTGGGTTAGTTTCAATTTCTCAAACTCTCCCAGGCTGCTGTGATGCATGTCTGACCT
AATTTCTAGTCCTCTTGGGGGGAAAAAAAAAAAAAACCTACAGAAATGTTATATTAAGAA
TGCTGCATTTCATATGGACTTTACCCTTGCAATATTAAGTCATGCCATATTTAAATTAAT
TTTGTGAATGATATCTACATATGTTTATGTCTGGTGTGAAATCACCAGCCCTGGAGTGTA
GCGTGTGATATAATTCTACCTGTGGTTTGTAGGTTATATATAGACACTAACATACATGAT
GATACAGCGTCCTGTATTTCTTAGTGCAAAGCCGTAGAGTATAAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAATAATTTAGGTATCATATTAGCTGAATACTATCCTCTATTACGTAACCTAATATA
CTGTTGGGTTAGTTTCAATTTCTCAAACTCTCCCAGGCTGCTGTGATGCATGTCTGACCT
AATTTCTAGTCCTCTTGGGGGGAAAAAAAAAAAAAACCTACAGAAATGTTATATTAAGAA
TGCTGCATTTCATATGGACTTTACCCTTGCAATATTAAGTCATGCCATATTTAAATTAAT
TTTGTGAATGATATCTACATATGTTTATGTCTGGTGTGAAATCACCAGCCCTGGAGTGTA
GCGTGTGATATAATTCTACCTGTGGTTTGTAGGTTATATATAGACACTAACATACATGAT
GATACAGCGTCCTGTATTTCTTAGTGCAAAGCCGTAGAGTATAAATGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, - strand, RNAz p=0.932481

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.932481

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-407, gnl|bosTau2|chr24 (44583287-44582894)
               

               
               1-407, gnl|canFam2|chr1 (17997650-17997379)
               

               
               1-407, gnl|dasNov1|scaffold_4012 (75690-75428)
               

               
               1-407, gnl|hg17|chr18 (57631754-57632032)
               

               
               1-407, gnl|Hg17|chr18 (57632163-57631756)
               

               
               1-407, gnl|loxAfr1|scaffold_30870 (24281-23997)
               

               
               1-407, gnl|mm7|chr1 (105181090-105181361)
               

               
               1-407, gnl|Mm7|chr1 (105181488-105181092)
               

               
               1-407, gnl|monDom2|scaffold_4 (65156748-65157018)
               

               
               1-407, gnl|oryCun1|scaffold_202791 (146719-146443)
               

               
               1-407, gnl|panTro1|chr17 (54525085-54525383)
               

               
               1-407, gnl|rheMac2|chr18 (55172568-55172881)
               

               
               1-407, gnl|rn3|chr13 (11311542-11311811)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-407, gnl|bosTau2|chr24 (44583287-44582894)
               

               
               1-407, gnl|canFam2|chr1 (17997650-17997379)
               

               
               1-407, gnl|dasNov1|scaffold_4012 (75690-75428)
               

               
               1-407, gnl|hg17|chr18 (57631754-57632032)
               

               
               1-407, gnl|Hg17|chr18 (57632163-57631756)
               

               
               1-407, gnl|loxAfr1|scaffold_30870 (24281-23997)
               

               
               1-407, gnl|mm7|chr1 (105181090-105181361)
               

               
               1-407, gnl|Mm7|chr1 (105181488-105181092)
               

               
               1-407, gnl|monDom2|scaffold_4 (65156748-65157018)
               

               
               1-407, gnl|oryCun1|scaffold_202791 (146719-146443)
               

               
               1-407, gnl|panTro1|chr17 (54525085-54525383)
               

               
               1-407, gnl|rheMac2|chr18 (55172568-55172881)
               

               
               1-407, gnl|rn3|chr13 (11311542-11311811)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ski (0.29347)
               

               
               ece (0.229305)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               ece (0.229305)

	1-407, gnl\|bosTau2\|chr24 (44583287-44582894)
	1-407, gnl\|canFam2\|chr1 (17997650-17997379)
	1-407, gnl\|dasNov1\|scaffold_4012 (75690-75428)
	1-407, gnl\|hg17\|chr18 (57631754-57632032)
	1-407, gnl\|Hg17\|chr18 (57632163-57631756)
	1-407, gnl\|loxAfr1\|scaffold_30870 (24281-23997)
	1-407, gnl\|mm7\|chr1 (105181090-105181361)
	1-407, gnl\|Mm7\|chr1 (105181488-105181092)
	1-407, gnl\|monDom2\|scaffold_4 (65156748-65157018)
	1-407, gnl\|oryCun1\|scaffold_202791 (146719-146443)
	1-407, gnl\|panTro1\|chr17 (54525085-54525383)
	1-407, gnl\|rheMac2\|chr18 (55172568-55172881)
	1-407, gnl\|rn3\|chr13 (11311542-11311811)