Non-Coding RNA Search

Ss1.1-rski0135_e18.5

Sequence:


               
               GCACAGGTCCGTGGGAGGCATCCGGGCATCTCTCTATAATGCTGTGACCATTGAAGATGT
CCAGAAGCTGGCAGCCTTCATGAAGAATTTTTTGGAGATGCACCAGCTATGAGCACATCC
TAACCAATACACACTGTTCCCTTGAACAATGTACAAAATTGAAAGTCACTTGGGAATGGG
TACACAAATTTAGGAAACATGGTATTTTTCTTGAATGGGCACACTTATGATAGATTCTTC
TTTTTTCAGAGAACAACAAGCTGTTGGGACTTAACGTTAATGCTGACTTGAACTGGAAGG
CTTTAAAAAAACTTCCTCTTGCTTTTCTAACGAATTCTAGCTTATGTTGTCTTTGCTGCT
AACTTTTTCTACCTAGATCTCATTCAGAGCTGCCTGTGGGTTTAATTATGCAAATTGCAG
GTAATTATTTTTAGAGACAAACAGACACATGGCGTGGAGGGTGGATGGGGCCCTCCAGGT
GCTGAATTTTGATCCTTTGCAAAATGACAGCAGTGGGGTCTCCTGGGTTCTGAAACTATT
AATTCAGGTCAGCACCGACCGTATGGTGAGTGTTTAGGAGTTCTAGACTAAAGGGCAAAC
TGGAGATTTCTTTATACTGTTATTCTCATGAAAAGGTAAAAATGACATACTACATTTTAT
ATAGTGAGGCCTGTTTTTAATACAAAATCATTTATATCTATGCATTTATATTTCTAATAA
TACTGTTCTTGTTGGTATATGTTGAGACTGAGAATTTGTTAGAATCCTTGACCTTGTGCC
TTATGGTGTTACATTCTCAACGGTTATGTCCTTCCCTGCCCCCTCCCCCTCTAGGCTGCT
TCGTAAGGTTGAGAAGCTGCTTGATTCACTTTTACTTACCTGTCAGTGGGTAGAAGAAAT
GTTGGTTGGTTGATTGGTTCTTTGTTGATCAGGTATGCTGTTAAACTAAAAATCTCTGTT
AAACTCCCTTCTTGTTTGTTCACATGCTTCTTCTGTTTGACCTGTGAAGCTGTGAGTTCT
GGAAGGTCTTTGCTGAAGACTCTTTTTCCCTATTGTATATCCCTTGTGTTTTATGTTGAA
CATGTAAAGGACATTAAAGTCCTAAAACATCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGGTCCGTGGGAGGCATCCGGGCATCTCTCTATAATGCTGTGACCATTGAAGATGT
CCAGAAGCTGGCAGCCTTCATGAAGAATTTTTTGGAGATGCACCAGCTATGAGCACATCC
TAACCAATACACACTGTTCCCTTGAACAATGTACAAAATTGAAAGTCACTTGGGAATGGG
TACACAAATTTAGGAAACATGGTATTTTTCTTGAATGGGCACACTTATGATAGATTCTTC
TTTTTTCAGAGAACAACAAGCTGTTGGGACTTAACGTTAATGCTGACTTGAACTGGAAGG
CTTTAAAAAAACTTCCTCTTGCTTTTCTAACGAATTCTAGCTTATGTTGTCTTTGCTGCT
AACTTTTTCTACCTAGATCTCATTCAGAGCTGCCTGTGGGTTTAATTATGCAAATTGCAG
GTAATTATTTTTAGAGACAAACAGACACATGGCGTGGAGGGTGGATGGGGCCCTCCAGGT
GCTGAATTTTGATCCTTTGCAAAATGACAGCAGTGGGGTCTCCTGGGTTCTGAAACTATT
AATTCAGGTCAGCACCGACCGTATGGTGAGTGTTTAGGAGTTCTAGACTAAAGGGCAAAC
TGGAGATTTCTTTATACTGTTATTCTCATGAAAAGGTAAAAATGACATACTACATTTTAT
ATAGTGAGGCCTGTTTTTAATACAAAATCATTTATATCTATGCATTTATATTTCTAATAA
TACTGTTCTTGTTGGTATATGTTGAGACTGAGAATTTGTTAGAATCCTTGACCTTGTGCC
TTATGGTGTTACATTCTCAACGGTTATGTCCTTCCCTGCCCCCTCCCCCTCTAGGCTGCT
TCGTAAGGTTGAGAAGCTGCTTGATTCACTTTTACTTACCTGTCAGTGGGTAGAAGAAAT
GTTGGTTGGTTGATTGGTTCTTTGTTGATCAGGTATGCTGTTAAACTAAAAATCTCTGTT
AAACTCCCTTCTTGTTTGTTCACATGCTTCTTCTGTTTGACCTGTGAAGCTGTGAGTTCT
GGAAGGTCTTTGCTGAAGACTCTTTTTCCCTATTGTATATCCCTTGTGTTTTATGTTGAA
CATGTAAAGGACATTAAAGTCCTAAAACATCTAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               4-571, gnl|bosTau2|chr8 (26142158-26142735)
               

               
               4-571, gnl|Hg17|chr9 (78173448-78174017)
               

               
               4-571, gnl|Mm7|chr19 (15607082-15606545)
               


               
               579-1114, gnl|bosTau2|chr8 (26142766-26143314)
               

               
               579-1114, gnl|Hg17|chr9 (78174031-78174563)
               

               
               579-1114, gnl|Mm7|chr19 (15606537-15606058)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-571, gnl|bosTau2|chr8 (26142158-26142735)
               

               
               4-571, gnl|Hg17|chr9 (78173448-78174017)
               

               
               4-571, gnl|Mm7|chr19 (15607082-15606545)
               


               
               579-1114, gnl|bosTau2|chr8 (26142766-26143314)
               

               
               579-1114, gnl|Hg17|chr9 (78174031-78174563)
               

               
               579-1114, gnl|Mm7|chr19 (15606537-15606058)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cty (0.936719)
               

               
               kid (0.778412)
               

               
               fat (0.58971)
               

               
               ski (0.440205)
               

               
               csk (0.422238)
               

               
               lyg (0.399308)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.936719)
               

               
               kid (0.778412)
               

               
               fat (0.58971)
               

               
               ski (0.440205)
               

               
               csk (0.422238)
               

               
               lyg (0.399308)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	4-571, gnl\|bosTau2\|chr8 (26142158-26142735)
	4-571, gnl\|Hg17\|chr9 (78173448-78174017)
	4-571, gnl\|Mm7\|chr19 (15607082-15606545)

	579-1114, gnl\|bosTau2\|chr8 (26142766-26143314)
	579-1114, gnl\|Hg17\|chr9 (78174031-78174563)
	579-1114, gnl\|Mm7\|chr19 (15606537-15606058)

	cty (0.936719)
	kid (0.778412)
	fat (0.58971)
	ski (0.440205)
	csk (0.422238)
	lyg (0.399308)
	bla (0.248694)
	ebs (0.236602)
	pan (0.23596)
	fbs (0.175346)
	sin (0.174948)
	fco (0.157208)
	lun (0.150489)
	spl (0.143184)
	ova (0.129132)
	sug (0.127291)
	ldo (0.0970026)