Non-Coding RNA Search

Ss1.1-rski0135_j16.5

Sequence:


               
               AATCTACAAAATATAGAAACAAAGGCAGTATCCTTTCTACAGTTTTATGAACTGTATTTT
CACCAAAACGTATAGGTTACAACTTAATGCTTATCTAAACTGCTTTTATTGTTTCAGGTG
CTTTTCTTTCATTTTTTTCATGGTGACCATCAGAAAACAAAATCATATTCTAACTTATTA
AATTTACCACAGTGAATAATGGAGCATTTTCATATAATATGCCATTATGTTTAAGGTATT
ATTTCCAAGATTGGTTATAACAGATGGGGGATATAATAAAGAAACTACTATTTTGGAAAA
TGACATTTTACTATTTTCCAATGTATATCACAATTGATGTGATTATTTTTCTTTTAAAGA
TTTCTTCATGTTTATGAAATGACCTTTTATTTTTAAAAAAAAAAGTTTTGAATTGTGTCT
TAATCTCTCAATATTTAGCTATTTTTCATTTACAACAGTACCGACACCAGTGATGATAGG
AGGCTGCTGTATATCAAGGCAGCTAATGTTGGACCAAGATGCAATTGGTTTTTAAATGTT
TCGTTAGCTCAGTTCTCCCAGACACGCTATTTCTATTTCAGCAGTACAAAGGCATGTTTT
TAAATCTATAAAATAAAGAATAAGGGATAGCTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTACAAAATATAGAAACAAAGGCAGTATCCTTTCTACAGTTTTATGAACTGTATTTT
CACCAAAACGTATAGGTTACAACTTAATGCTTATCTAAACTGCTTTTATTGTTTCAGGTG
CTTTTCTTTCATTTTTTTCATGGTGACCATCAGAAAACAAAATCATATTCTAACTTATTA
AATTTACCACAGTGAATAATGGAGCATTTTCATATAATATGCCATTATGTTTAAGGTATT
ATTTCCAAGATTGGTTATAACAGATGGGGGATATAATAAAGAAACTACTATTTTGGAAAA
TGACATTTTACTATTTTCCAATGTATATCACAATTGATGTGATTATTTTTCTTTTAAAGA
TTTCTTCATGTTTATGAAATGACCTTTTATTTTTAAAAAAAAAAGTTTTGAATTGTGTCT
TAATCTCTCAATATTTAGCTATTTTTCATTTACAACAGTACCGACACCAGTGATGATAGG
AGGCTGCTGTATATCAAGGCAGCTAATGTTGGACCAAGATGCAATTGGTTTTTAAATGTT
TCGTTAGCTCAGTTCTCCCAGACACGCTATTTCTATTTCAGCAGTACAAAGGCATGTTTT
TAAATCTATAAAATAAAGAATAAGGGATAGCTTTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr11 (44200049-44199421)
               

               
               1-636, gnl|Hg17|chr13 (32248577-32249215)
               

               
               1-636, gnl|Mm7|chr5 (149742281-149742887)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr11 (44200049-44199421)
               

               
               1-636, gnl|Hg17|chr13 (32248577-32249215)
               

               
               1-636, gnl|Mm7|chr5 (149742281-149742887)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hea (0.204499)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-636, gnl\|bosTau2\|chr11 (44200049-44199421)
	1-636, gnl\|Hg17\|chr13 (32248577-32249215)
	1-636, gnl\|Mm7\|chr5 (149742281-149742887)

	hea (0.204499)
	ski (0.146735)
	liv (0.146284)
	pgl (0.118483)
	cty (0.10408)
	ldo (0.0970026)