Ss1.1-rski0137_b8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGATAGAATTGGGACATTTCTTGGGTCCAAATACAAGAAAGTTGTCTACCGTCAATAT GATGATATCACATTCACGCATCAAACAGAAAGAAATGAAGATGAAAAACATCTGGATATA CTAGGTCCTTTAATATTTCTCAGCCCAGGTCAGAAACTCCATATTGTCTTTAAAAATAAC GCCTCAAGACCATATTCTATTCATGCTCATGGAGTAAAAACTAACTATTCCACTGTTGTT TCAACACAGCCAGGAGAGATCCAAACATATGTTTGGCAGATTCCTGAAAGAAGTGGTCCC ACTTCAAAGGACTTTGAGTGCATACCTTGGTTTTATTATTCAACTGTGGATGTGGTTAAG GATCTTAACAGCGGACTGGTAGGTCCTTTGATCATATGTCGAAAAGGCACCAAACCCAGC ATAGTACACCGTGTTCTCCACTTCATGATTTTTAATGAGAACTTATCCTGGTACTTTGAA GAAAACATCAATACCTATTCTCGGGAACCAAACCAAGTAGACAGGAATGATCCTGTTTTT GACCTCAGCAACCAAATGCACGCAATTAATGGAAGAATGTTTGGAACTAACCAAGGCCTA ACATTTCATGTTGGGGATGAAGTGAATTGGTATCTGATTGGCATGGGGGGTGAGTTTGAC CTCCATACAGTTCACTTTCACGGCCACAGCTTTGAATTCACGGATGTGGGACTGTATCAC TCTGATGTTTACGATCTTCCTCCTGGGGTCTATAAAACTGTGAAAATGTATCCAAGAGAT GTTGGAACCTGGTTATTTCATTGCCATGTCAATGTACACATTACAGCTGGAATGGAAAGC ACTTACACTGTAATTGAGTAAAAAGCACAAATATCTGCCTGCTATGAATGTTAAGTCCAG TAGCAGAGGTAAAGTTGCTGAAGAAGAAAAACATCAGGAGTGTAGAAGAGGCTGTCTAAG GACTTTCACGGCAATGTACCAGGAAAGCTAGCTTGAAATAAAAATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGATAGAATTGGGACATTTCTTGGGTCCAAATACAAGAAAGTTGTCTACCGTCAATAT GATGATATCACATTCACGCATCAAACAGAAAGAAATGAAGATGAAAAACATCTGGATATA CTAGGTCCTTTAATATTTCTCAGCCCAGGTCAGAAACTCCATATTGTCTTTAAAAATAAC GCCTCAAGACCATATTCTATTCATGCTCATGGAGTAAAAACTAACTATTCCACTGTTGTT TCAACACAGCCAGGAGAGATCCAAACATATGTTTGGCAGATTCCTGAAAGAAGTGGTCCC ACTTCAAAGGACTTTGAGTGCATACCTTGGTTTTATTATTCAACTGTGGATGTGGTTAAG GATCTTAACAGCGGACTGGTAGGTCCTTTGATCATATGTCGAAAAGGCACCAAACCCAGC ATAGTACACCGTGTTCTCCACTTCATGATTTTTAATGAGAACTTATCCTGGTACTTTGAA GAAAACATCAATACCTATTCTCGGGAACCAAACCAAGTAGACAGGAATGATCCTGTTTTT GACCTCAGCAACCAAATGCACGCAATTAATGGAAGAATGTTTGGAACTAACCAAGGCCTA ACATTTCATGTTGGGGATGAAGTGAATTGGTATCTGATTGGCATGGGGGGTGAGTTTGAC CTCCATACAGTTCACTTTCACGGCCACAGCTTTGAATTCACGGATGTGGGACTGTATCAC TCTGATGTTTACGATCTTCCTCCTGGGGTCTATAAAACTGTGAAAATGTATCCAAGAGAT GTTGGAACCTGGTTATTTCATTGCCATGTCAATGTACACATTACAGCTGGAATGGAAAGC ACTTACACTGTAATTGAGTAAAAAGCACAAATATCTGCCTGCTATGAATGTTAAGTCCAG TAGCAGAGGTAAAGTTGCTGAAGAAGAAAAACATCAGGAGTGTAGAAGAGGCTGTCTAAG GACTTTCACGGCAATGTACCAGGAAAGCTAGCTTGAAATAAAAATTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 113-254, gnl|bosTau2|chr1 (76096895-76096754) | |
| 113-254, gnl|Hg17|chr3 (150447993-150447852) | |
| 113-254, gnl|Mm7|chr3 (19715399-19715540) | |
| 359-560, gnl|bosTau2|chr1 (76090211-76090010) | |
| 359-560, gnl|canFam2|chr23 (47097900-47098033) | |
| 359-560, gnl|danRer3|chr15 (2187386-2187255) | |
| 359-560, gnl|dasNov1|scaffold_152434 (139-7) | |
| 359-560, gnl|echTel1|scaffold_22412 (1748-1878) | |
| 359-560, gnl|fr1|chrUn (200113363-200113491) | |
| 359-560, gnl|hg17|chr3 (150444736-150444869) | |
| 359-560, gnl|Hg17|chr3 (150444942-150444741) | |
| 359-560, gnl|loxAfr1|scaffold_43878 (29965-30098) | |
| 359-560, gnl|mm7|chr3 (19719597-19719465) | |
| 359-560, gnl|Mm7|chr3 (19719375-19719591) | |
| 359-560, gnl|oryCun1|scaffold_173242 (27709-27577) | |
| 359-560, gnl|rheMac2|chr2 (138553056-138552923) | |
| 359-560, gnl|rn3|chr2 (105074710-105074578) | |
| 359-560, gnl|tetNig1|chr7 (3532343-3532218) | |
| 359-560, gnl|xenTro1|scaffold_567 (801883-802016) | |
| 562-697, gnl|bosTau2|chr1 (76023081-76022946) | |
| 562-697, gnl|canFam2|chr23 (47040746-47040893) | |
| 562-697, gnl|danRer3|chr22 (48498783-48498638) | |
| 562-697, gnl|dasNov1|scaffold_4999 (46453-46600) | |
| 562-697, gnl|echTel1|scaffold_290256 (106823-106676) | |
| 562-697, gnl|fr1|chrUn (200112979-200113124) | |
| 562-697, gnl|galGal2|chr9 (23342822-23342675) | |
| 562-697, gnl|hg17|chr3 (150378320-150378467) | |
| 562-697, gnl|Hg17|chr3 (150378465-150378330) | |
| 562-697, gnl|loxAfr1|scaffold_43878 (26318-26467) | |
| 562-697, gnl|mm7|chr3 (19720097-19719950) | |
| 562-697, gnl|Mm7|chr3 (19719950-19720085) | |
| 562-697, gnl|monDom2|scaffold_28 (20786232-20786374) | |
| 562-697, gnl|oryCun1|scaffold_173242 (28269-28122) | |
| 562-697, gnl|panTro1|chr2 (153411391-153411538) | |
| 562-697, gnl|rheMac2|chr2 (138618209-138618062) | |
| 562-697, gnl|rn3|chr2 (105075210-105075063) | |
| 562-697, gnl|tetNig1|chr7 (3532642-3532501) | |
| 562-697, gnl|xenTro1|scaffold_275 (339589-339443) | |
| 702-865, gnl|bosTau2|chr1 (76082552-76082389) | |
| 702-865, gnl|Hg17|chr3 (150431387-150431224) | |
| 702-865, gnl|Mm7|chr3 (19721070-19721219) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 113-254, gnl|bosTau2|chr1 (76096895-76096754) | |
| 113-254, gnl|Hg17|chr3 (150447993-150447852) | |
| 113-254, gnl|Mm7|chr3 (19715399-19715540) | |
| 359-560, gnl|bosTau2|chr1 (76090211-76090010) | |
| 359-560, gnl|canFam2|chr23 (47097900-47098033) | |
| 359-560, gnl|danRer3|chr15 (2187386-2187255) | |
| 359-560, gnl|dasNov1|scaffold_152434 (139-7) | |
| 359-560, gnl|echTel1|scaffold_22412 (1748-1878) | |
| 359-560, gnl|fr1|chrUn (200113363-200113491) | |
| 359-560, gnl|hg17|chr3 (150444736-150444869) | |
| 359-560, gnl|Hg17|chr3 (150444942-150444741) | |
| 359-560, gnl|loxAfr1|scaffold_43878 (29965-30098) | |
| 359-560, gnl|mm7|chr3 (19719597-19719465) | |
| 359-560, gnl|Mm7|chr3 (19719375-19719591) | |
| 359-560, gnl|oryCun1|scaffold_173242 (27709-27577) | |
| 359-560, gnl|rheMac2|chr2 (138553056-138552923) | |
| 359-560, gnl|rn3|chr2 (105074710-105074578) | |
| 359-560, gnl|tetNig1|chr7 (3532343-3532218) | |
| 359-560, gnl|xenTro1|scaffold_567 (801883-802016) | |
| 562-697, gnl|bosTau2|chr1 (76023081-76022946) | |
| 562-697, gnl|canFam2|chr23 (47040746-47040893) | |
| 562-697, gnl|danRer3|chr22 (48498783-48498638) | |
| 562-697, gnl|dasNov1|scaffold_4999 (46453-46600) | |
| 562-697, gnl|echTel1|scaffold_290256 (106823-106676) | |
| 562-697, gnl|fr1|chrUn (200112979-200113124) | |
| 562-697, gnl|galGal2|chr9 (23342822-23342675) | |
| 562-697, gnl|hg17|chr3 (150378320-150378467) | |
| 562-697, gnl|Hg17|chr3 (150378465-150378330) | |
| 562-697, gnl|loxAfr1|scaffold_43878 (26318-26467) | |
| 562-697, gnl|mm7|chr3 (19720097-19719950) | |
| 562-697, gnl|Mm7|chr3 (19719950-19720085) | |
| 562-697, gnl|monDom2|scaffold_28 (20786232-20786374) | |
| 562-697, gnl|oryCun1|scaffold_173242 (28269-28122) | |
| 562-697, gnl|panTro1|chr2 (153411391-153411538) | |
| 562-697, gnl|rheMac2|chr2 (138618209-138618062) | |
| 562-697, gnl|rn3|chr2 (105075210-105075063) | |
| 562-697, gnl|tetNig1|chr7 (3532642-3532501) | |
| 562-697, gnl|xenTro1|scaffold_275 (339589-339443) | |
| 702-865, gnl|bosTau2|chr1 (76082552-76082389) | |
| 702-865, gnl|Hg17|chr3 (150431387-150431224) | |
| 702-865, gnl|Mm7|chr3 (19721070-19721219) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (3.22817) | |
| csk (0.844476) | |
| fat (0.147427) |