Non-Coding RNA Search

Ss1.1-rski0137_e23.5

Sequence:


               
               CTCTCCTGCAATGATCTGAGTAGAAGTTGGGCAGTTCCATTGCTCCAAAATATCTCCTCC
CCATCCCACTCCCATCACCTGCCACCTATCCATGAGGCTTTGCTTCAGCCCTTAGAAACC
TCTTTCTTTGGCTTCTGGAATGTTTTCATCTATGGCCATGCCCCTGCCCCCCCAATACCA
CATACTCTTGGGTGGATAATGTATAGCCAGCTGAGAGGCAGGGCTGCAGGTGGTGGTGAC
AGGCAGGATACTTGGGACGAATTTTGTCTCCTTCATGTTTTTTCCCCTAGAGCCAACCCT
TCAGGAGCCCTAGCCAGTGTGAGTTGGGAATACTTAATAGTAAATAAGACGCTGACTTTA
CACAAGCTACACATTTTCTACTTTTCAGAAACCAACAAGTCTCTCTAGAATTTTTTCTTC
GTTCCCTAAAATTGGACGGTAGCCAAGATATAAAGCAAGTCATTTGGAACCTGTCAAGTG
TGCACTAAAGCTACTTTATCATGAGCTGTATTGAGAAGGCTCCACCCCGCGGGAGGCCAG
CGAAGGCTGGGACCACAAAGGCACAGAGTCCAGCAGTTGACCACTTGTGGGCCTCCTTTC
TGCCTCAGAGAACTGGGGCCGGGAAGTGATGAAGGGGAATGTTCTTAGAAGAGGAAATAT
CCTTTGTCCTGTTGAGAGAGAGCAGGGCCCTACCGGTAGGCTTACTGTAAAAATCCACCC
GAGAGCAGCTATCATATTCAGAATAAGAGCACGAGCTGCTGCTTGGGACCTATGGTGAGT
CATTTCTTTGAAATCGCATGGAAAGAATGATGGTTGATCGACGCACTGTGCAATCGCAGT
GTCTGAAACTAAGGCTGGCTAAGTGTTCTCTGCTGTCGTCTGAACATCAGGATGATCGGT
CATTGAAAGAGGCATCCTCTTAGTGCAGGGTCACAGAAGCACTTCTCCTTGTGTGTTCAG
AGGCATTTCTTGTCAGCAGTGGTCGCTGTAACATCACATCGAGAGCTGCTGATGGACCGC
CTTACAGGACCTTCATGTAATTTTGTCCCAACCAACAGCCTCCAGGTCCTAAAAGTCAAG
GCACTTCATCAGTTTCTTTGGCACACGTGACAACATGTCTTTGGCCCTGAGCCCAACACA
GTTTGTACTTCATGAAATATATTGTACATTTTACATAGTTTAATTTAAAAAATACATTTT
AAGCTGGTTGATCTTTGACTGCCTTATTTATTATAACCTTTCAGCACATTCCAAGGTTTT
AGTTACTCAGGAAGGAGTTAATTAAAATGATTTTATTTTGGTCTGATGGATGTTTTTTAA
AAGGAAAATTATTATTATGAACCTTCAGCCTACTTTCCCTGAGTGCCGTAAAAGTGCTTG
TAAATCATTTTTTTTTAAGAGGAAAGAAAAAAATGGTGTTTGACATTGATGGCAATTCAA
AAATATATATGGAACTGAAACATTAGCTTAGCTAAAATAAAAGCAATCTGTGTTTGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCCTGCAATGATCTGAGTAGAAGTTGGGCAGTTCCATTGCTCCAAAATATCTCCTCC
CCATCCCACTCCCATCACCTGCCACCTATCCATGAGGCTTTGCTTCAGCCCTTAGAAACC
TCTTTCTTTGGCTTCTGGAATGTTTTCATCTATGGCCATGCCCCTGCCCCCCCAATACCA
CATACTCTTGGGTGGATAATGTATAGCCAGCTGAGAGGCAGGGCTGCAGGTGGTGGTGAC
AGGCAGGATACTTGGGACGAATTTTGTCTCCTTCATGTTTTTTCCCCTAGAGCCAACCCT
TCAGGAGCCCTAGCCAGTGTGAGTTGGGAATACTTAATAGTAAATAAGACGCTGACTTTA
CACAAGCTACACATTTTCTACTTTTCAGAAACCAACAAGTCTCTCTAGAATTTTTTCTTC
GTTCCCTAAAATTGGACGGTAGCCAAGATATAAAGCAAGTCATTTGGAACCTGTCAAGTG
TGCACTAAAGCTACTTTATCATGAGCTGTATTGAGAAGGCTCCACCCCGCGGGAGGCCAG
CGAAGGCTGGGACCACAAAGGCACAGAGTCCAGCAGTTGACCACTTGTGGGCCTCCTTTC
TGCCTCAGAGAACTGGGGCCGGGAAGTGATGAAGGGGAATGTTCTTAGAAGAGGAAATAT
CCTTTGTCCTGTTGAGAGAGAGCAGGGCCCTACCGGTAGGCTTACTGTAAAAATCCACCC
GAGAGCAGCTATCATATTCAGAATAAGAGCACGAGCTGCTGCTTGGGACCTATGGTGAGT
CATTTCTTTGAAATCGCATGGAAAGAATGATGGTTGATCGACGCACTGTGCAATCGCAGT
GTCTGAAACTAAGGCTGGCTAAGTGTTCTCTGCTGTCGTCTGAACATCAGGATGATCGGT
CATTGAAAGAGGCATCCTCTTAGTGCAGGGTCACAGAAGCACTTCTCCTTGTGTGTTCAG
AGGCATTTCTTGTCAGCAGTGGTCGCTGTAACATCACATCGAGAGCTGCTGATGGACCGC
CTTACAGGACCTTCATGTAATTTTGTCCCAACCAACAGCCTCCAGGTCCTAAAAGTCAAG
GCACTTCATCAGTTTCTTTGGCACACGTGACAACATGTCTTTGGCCCTGAGCCCAACACA
GTTTGTACTTCATGAAATATATTGTACATTTTACATAGTTTAATTTAAAAAATACATTTT
AAGCTGGTTGATCTTTGACTGCCTTATTTATTATAACCTTTCAGCACATTCCAAGGTTTT
AGTTACTCAGGAAGGAGTTAATTAAAATGATTTTATTTTGGTCTGATGGATGTTTTTTAA
AAGGAAAATTATTATTATGAACCTTCAGCCTACTTTCCCTGAGTGCCGTAAAAGTGCTTG
TAAATCATTTTTTTTTAAGAGGAAAGAAAAAAATGGTGTTTGACATTGATGGCAATTCAA
AAATATATATGGAACTGAAACATTAGCTTAGCTAAAATAAAAGCAATCTGTGTTTGAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               559-717, + strand, RNAz p=0.88462

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-717, + strand, RNAz p=0.88462

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005715, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005715, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-1499, gnl|bosTau2|chr9 (51709197-51710688)
               

               
               14-1499, gnl|Hg17|chr6 (149438340-149439821)
               

               
               14-1499, gnl|Mm7|chr10 (7906600-7905175)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1499, gnl|bosTau2|chr9 (51709197-51710688)
               

               
               14-1499, gnl|Hg17|chr6 (149438340-149439821)
               

               
               14-1499, gnl|Mm7|chr10 (7906600-7905175)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               jca (0.34188)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               jca (0.34188)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	14-1499, gnl\|bosTau2\|chr9 (51709197-51710688)
	14-1499, gnl\|Hg17\|chr6 (149438340-149439821)
	14-1499, gnl\|Mm7\|chr10 (7906600-7905175)

	fcc (0.39557)
	aor (0.390549)
	jca (0.34188)
	vin (0.332557)
	ski (0.29347)
	cbe (0.239234)
	spc (0.226732)
	mgm (0.180343)
	sto (0.179824)
	sin (0.174948)
	fat (0.147427)
	liv (0.146284)
	csk (0.140746)
	nmm (0.132802)
	bla (0.124347)
	tra (0.123092)
	ldo (0.0970026)