Non-Coding RNA Search

Ss1.1-rski0137_h16.5

Sequence:


               
               CAACAAAGTCCTTTCTAAGCACAAGGATCTGAAGTCTGACGGCTTTAGTCTTGACACCTG
CCGGAGCATCGTGTCCGTTATGGACAGTGACACCACTGGGAAGCTGGGCTTCGAAGAATT
TAAGTATCTCTGGAACAACATTAAGAAGTGGCAGTGCATTTATAAGCAATATGACAGGGA
CCAGTCCGGGTCTCTGGGAAGTTCTCAGGTGCGGGGGGCTCTGCAGGCAGCAGGCTTCCA
GCTAAATGAACAACTTTACCAAACGATTATCCGCCGATATGCAGAAGAGGATGGAAGAAT
GGATTTTAACAGCTTCATCAGCTGCCTGGTCCGCCTGGATGCCATGTTTCGTGCCTTCAG
ATCCCTGGATAGAGATGCCGATGGCCTGATTCAGGTGTATATCCAAGAATGGCTTCAGCT
GACCATGTATTCCTGAAGTGGACACTGAGTCAGGCCTCTCCTTAGAGGACAGACCTGTTG
GAAGCCTAGCATGCTTTCTGCACGGTTGCAGATACCCTATCCAGAACTGTCCTTTCCTAC
CGAGCTCTTTCACAGTCCTACCTATTTCTGAATTTGTGCTGCTCTTTACCGCTTAATTAA
AACAGGTTTTTCAGACAGAGGTATGTGGAATGATTGGACCGTGGGGACCTGCTGTATAGC
ACAGAGAACTCTACGCAATATTCTGTGAAAATGCATGCGGGAAAGAATCTGGGAGAATGG
ATGTGTGTGTATACTTGTGTAATTCAATCACCTTGCTATACAGCAGAAATTATCACAACA
TTGTAAATCAACTGTACGTCAATAAAACTTTAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACAAAGTCCTTTCTAAGCACAAGGATCTGAAGTCTGACGGCTTTAGTCTTGACACCTG
CCGGAGCATCGTGTCCGTTATGGACAGTGACACCACTGGGAAGCTGGGCTTCGAAGAATT
TAAGTATCTCTGGAACAACATTAAGAAGTGGCAGTGCATTTATAAGCAATATGACAGGGA
CCAGTCCGGGTCTCTGGGAAGTTCTCAGGTGCGGGGGGCTCTGCAGGCAGCAGGCTTCCA
GCTAAATGAACAACTTTACCAAACGATTATCCGCCGATATGCAGAAGAGGATGGAAGAAT
GGATTTTAACAGCTTCATCAGCTGCCTGGTCCGCCTGGATGCCATGTTTCGTGCCTTCAG
ATCCCTGGATAGAGATGCCGATGGCCTGATTCAGGTGTATATCCAAGAATGGCTTCAGCT
GACCATGTATTCCTGAAGTGGACACTGAGTCAGGCCTCTCCTTAGAGGACAGACCTGTTG
GAAGCCTAGCATGCTTTCTGCACGGTTGCAGATACCCTATCCAGAACTGTCCTTTCCTAC
CGAGCTCTTTCACAGTCCTACCTATTTCTGAATTTGTGCTGCTCTTTACCGCTTAATTAA
AACAGGTTTTTCAGACAGAGGTATGTGGAATGATTGGACCGTGGGGACCTGCTGTATAGC
ACAGAGAACTCTACGCAATATTCTGTGAAAATGCATGCGGGAAAGAATCTGGGAGAATGG
ATGTGTGTGTATACTTGTGTAATTCAATCACCTTGCTATACAGCAGAAATTATCACAACA
TTGTAAATCAACTGTACGTCAATAAAACTTTAAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846287|ref|XP_597997.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846287|ref|XP_597997.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.609294
               

               
               400-515, - strand, RNAz p=0.560753

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.609294
               

               
               400-515, - strand, RNAz p=0.560753

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-613, gnl|bosTau2|chr18 (24710393-24709780)
               

               
               1-613, gnl|Hg17|chr16 (54158481-54159093)
               

               
               1-613, gnl|Mm7|chr8 (91495043-91495655)
               


               
               642-816, gnl|bosTau2|chr11 (32126632-32126808)
               


               
               645-815, gnl|bosTau2|chr10 (9959233-9959401)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr18 (24710393-24709780)
               

               
               1-613, gnl|Hg17|chr16 (54158481-54159093)
               

               
               1-613, gnl|Mm7|chr8 (91495043-91495655)
               


               
               642-816, gnl|bosTau2|chr11 (32126632-32126808)
               


               
               645-815, gnl|bosTau2|chr10 (9959233-9959401)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nep (0.183925)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)

	1-119, - strand, RNAz p=0.609294
	400-515, - strand, RNAz p=0.560753

	1-613, gnl\|bosTau2\|chr18 (24710393-24709780)
	1-613, gnl\|Hg17\|chr16 (54158481-54159093)
	1-613, gnl\|Mm7\|chr8 (91495043-91495655)

	642-816, gnl\|bosTau2\|chr11 (32126632-32126808)

	645-815, gnl\|bosTau2\|chr10 (9959233-9959401)

	nep (0.183925)
	ski (0.146735)
	lin (0.145603)
	csk (0.140746)
	lyg (0.133103)