Non-Coding RNA Search

Ss1.1-rski0137_j4.5

Sequence:


               
               ACAGAAGAAGGGAGCTAGAACAAGCTAATATCTGAATCCCAGTCATCCTCATCTGTTGTG
TAAAATTACAGGAATATTAAACGTGCAAACACGTGCATGGTTGCTGCAAAGAAGCGGGGA
GCCATCATTAGAATTTGGTTTGATGTTGGGACTTAACAATTAACAGGTTTCTTTCATCCC
TTGTCAGTTACTGATCATGCCCCTGCTTCTGCAAACCTGAACTGTTTGTTTTGGCAGCAT
TACATTCATCATCATCCCATTGCCCCATCTGGAAGATGCCTGCTTCCTCCCCTGCTGCCT
GCAGCTGTAAACCAGAGGATATTAAACTAGTTTTACAGCCACACACACACACACACACAT
ATTTGTGGTCATTTCCCTTGGGATTAAGGAAGCCCCCTCCTCCCCACACACAAATTCATT
CCCTCAGTGCTGCTGGCATATGCATACACAGATGTGTAAGTAGGTGTGCATGTGTACTCT
GTACATATAGCTATTCTTTCCTGAAGACCATGCTAACTTTATGAAACTACTTTCACATTC
CAATGTGCTTCACAGCAGAGGAAATAAAGTGATATGAAAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAAGAAGGGAGCTAGAACAAGCTAATATCTGAATCCCAGTCATCCTCATCTGTTGTG
TAAAATTACAGGAATATTAAACGTGCAAACACGTGCATGGTTGCTGCAAAGAAGCGGGGA
GCCATCATTAGAATTTGGTTTGATGTTGGGACTTAACAATTAACAGGTTTCTTTCATCCC
TTGTCAGTTACTGATCATGCCCCTGCTTCTGCAAACCTGAACTGTTTGTTTTGGCAGCAT
TACATTCATCATCATCCCATTGCCCCATCTGGAAGATGCCTGCTTCCTCCCCTGCTGCCT
GCAGCTGTAAACCAGAGGATATTAAACTAGTTTTACAGCCACACACACACACACACACAT
ATTTGTGGTCATTTCCCTTGGGATTAAGGAAGCCCCCTCCTCCCCACACACAAATTCATT
CCCTCAGTGCTGCTGGCATATGCATACACAGATGTGTAAGTAGGTGTGCATGTGTACTCT
GTACATATAGCTATTCTTTCCTGAAGACCATGCTAACTTTATGAAACTACTTTCACATTC
CAATGTGCTTCACAGCAGAGGAAATAAAGTGATATGAAAAATAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               195-583, gnl|bosTau2|chr16 (2625971-2626362)
               

               
               195-583, gnl|Hg17|chr1 (200190011-200190400)
               

               
               195-583, gnl|Mm7|chr1 (133800486-133800100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-583, gnl|bosTau2|chr16 (2625971-2626362)
               

               
               195-583, gnl|Hg17|chr1 (200190011-200190400)
               

               
               195-583, gnl|Mm7|chr1 (133800486-133800100)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mas (0.210305)
               

               
               aor (0.195274)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               ute (0.132784)

	195-583, gnl\|bosTau2\|chr16 (2625971-2626362)
	195-583, gnl\|Hg17\|chr1 (200190011-200190400)
	195-583, gnl\|Mm7\|chr1 (133800486-133800100)

	mas (0.210305)
	aor (0.195274)
	cli (0.152812)
	ski (0.146735)
	ute (0.132784)