Non-Coding RNA Search

Ss1.1-rski0137_n2.5

Sequence:


               
               GCACCAGCTGGGCAGGACATGGTCTCTGACGACATGAGGAACTTTGCAGAGCAGCTGAAA
CCTCTGGTTCACCTAGAGAAAATAGACCCAAAGAGGCTCATGTGACTCATGAATCTGTCC
ACCCTTGGGGCTTGTCTTCAGCTGTTACATAAAAGAAGGTGTTATAATTGCCCCCTCTCA
ACACTTCTAGCCAGGCATCCTTCCCTCGGGAAGGAGGACAGTGAGAACTTGGTTCTTTGC
ACTGTTTTCCTTACATGGGGGGTTCACTTTCGTGACAGCTTTCCTAAGTCAAAGGCTAAG
GATCCCATGGAGAATCTATACAATCCCTCTGCATAAATGGGGATATAATCCTTCTGCATA
AAAGGAGCTTCCGGGAAGAAAAATATCTTAATTGTTTTGCCATTTGTGTAAAAGGCAATA
GAAATAGAGTGTGAAATAGAGGGTGAGTTTGTGTGGTAATAAAGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCAGCTGGGCAGGACATGGTCTCTGACGACATGAGGAACTTTGCAGAGCAGCTGAAA
CCTCTGGTTCACCTAGAGAAAATAGACCCAAAGAGGCTCATGTGACTCATGAATCTGTCC
ACCCTTGGGGCTTGTCTTCAGCTGTTACATAAAAGAAGGTGTTATAATTGCCCCCTCTCA
ACACTTCTAGCCAGGCATCCTTCCCTCGGGAAGGAGGACAGTGAGAACTTGGTTCTTTGC
ACTGTTTTCCTTACATGGGGGGTTCACTTTCGTGACAGCTTTCCTAAGTCAAAGGCTAAG
GATCCCATGGAGAATCTATACAATCCCTCTGCATAAATGGGGATATAATCCTTCTGCATA
AAAGGAGCTTCCGGGAAGAAAAATATCTTAATTGTTTTGCCATTTGTGTAAAAGGCAATA
GAAATAGAGTGTGAAATAGAGGGTGAGTTTGTGTGGTAATAAAGGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-266, - strand, RNAz p=0.983329

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-266, - strand, RNAz p=0.983329

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               86-201, - strand, RNAmicro p=0.957876

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               86-201, - strand, RNAmicro p=0.957876

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-382, gnl|bosTau2|chr2 (76545575-76545952)
               

               
               1-382, gnl|Hg17|chr1 (28345519-28346532)
               

               
               1-382, gnl|Mm7|chr4 (131838097-131837604)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr2 (76545575-76545952)
               

               
               1-382, gnl|Hg17|chr1 (28345519-28346532)
               

               
               1-382, gnl|Mm7|chr4 (131838097-131837604)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               ski (0.146735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ski (0.146735)

	1-382, gnl\|bosTau2\|chr2 (76545575-76545952)
	1-382, gnl\|Hg17\|chr1 (28345519-28346532)
	1-382, gnl\|Mm7\|chr4 (131838097-131837604)