Non-Coding RNA Search

Ss1.1-rski0138_n8.5

Sequence:


               
               TTAGTTTAGTACAATCTCAGCTTGTCATTTGTTTTTCTCACAGCATCACAAACCATTTCC
TGCTGTCTTCCCAACTACCAGTGCCCTTCAATAACCCCCTTGCCTCTAGAATCATCTGTT
CCAAGTCTTCATACACACCTAGCACATAGTAGGTGCTCACATATTAATTTTCTTCCCTCC
CTTATTGATCACATAGCCTCCGTTTCCCCATATGATTCCAACCCAGTGGTAGATGACATT
TTCATGTTACAAAGACATCTACTGGGTAGAAATGAGTCTTACTTGAATAAAGGAATTCTG
ACAGATAAGCTTTGGTAGACCAAAAAAAAAAGCAACAGGAAAGAAAATATTCTTCAGTAG
AACATTTTTTAAGTGTAGAAAAGAAAGATGGGAAATTACTATGTAACTCTGTTCAGGTTA
CCTTGACTGAAACACATGTTTTTGGTGGCTTTCTTTTCCTCAAACAACTCTCTAAATCCA
ACTTGCTGGATTCCTCATCTGTCATCACGTTGGAAACCCTTACTCGACCTATGTATTTAG
AGAGTTTTGTCAGAAAACATTTTTAACTTGCAGTATTTAAAAGAACCATATTTACTGTTC
TTAAAATGTCATTCAAATGCATGTATTGTCTATTGTTTGGGGATGGGAACTAGTTTTGCA
AAAAACACCTAATGTTGTATAATAATGCCCCAATGATCTTGCTGGTTAAAAATACAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTTTAGTACAATCTCAGCTTGTCATTTGTTTTTCTCACAGCATCACAAACCATTTCC
TGCTGTCTTCCCAACTACCAGTGCCCTTCAATAACCCCCTTGCCTCTAGAATCATCTGTT
CCAAGTCTTCATACACACCTAGCACATAGTAGGTGCTCACATATTAATTTTCTTCCCTCC
CTTATTGATCACATAGCCTCCGTTTCCCCATATGATTCCAACCCAGTGGTAGATGACATT
TTCATGTTACAAAGACATCTACTGGGTAGAAATGAGTCTTACTTGAATAAAGGAATTCTG
ACAGATAAGCTTTGGTAGACCAAAAAAAAAAGCAACAGGAAAGAAAATATTCTTCAGTAG
AACATTTTTTAAGTGTAGAAAAGAAAGATGGGAAATTACTATGTAACTCTGTTCAGGTTA
CCTTGACTGAAACACATGTTTTTGGTGGCTTTCTTTTCCTCAAACAACTCTCTAAATCCA
ACTTGCTGGATTCCTCATCTGTCATCACGTTGGAAACCCTTACTCGACCTATGTATTTAG
AGAGTTTTGTCAGAAAACATTTTTAACTTGCAGTATTTAAAAGAACCATATTTACTGTTC
TTAAAATGTCATTCAAATGCATGTATTGTCTATTGTTTGGGGATGGGAACTAGTTTTGCA
AAAAACACCTAATGTTGTATAATAATGCCCCAATGATCTTGCTGGTTAAAAATACAGTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               445-561, - strand, RNAz p=0.600935

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               445-561, - strand, RNAz p=0.600935

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               22-720, gnl|bosTau2|chr16 (15112326-15113024)
               

               
               22-720, gnl|Hg17|chr9 (77561443-77560756)
               

               
               22-720, gnl|Mm7|chr19 (16088736-16089436)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-720, gnl|bosTau2|chr16 (15112326-15113024)
               

               
               22-720, gnl|Hg17|chr9 (77561443-77560756)
               

               
               22-720, gnl|Mm7|chr19 (16088736-16089436)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               sug (0.381874)
               

               
               sin (0.349895)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ova (0.129132)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               sin (0.349895)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ova (0.129132)

	22-720, gnl\|bosTau2\|chr16 (15112326-15113024)
	22-720, gnl\|Hg17\|chr9 (77561443-77560756)
	22-720, gnl\|Mm7\|chr19 (16088736-16089436)

	sug (0.381874)
	sin (0.349895)
	fcc (0.197785)
	gul (0.177588)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	ova (0.129132)