Non-Coding RNA Search

Ss1.1-rsme001_j2.5

Sequence:


               
               CTCTCTTACCGATAATCTACACTTATTGCCAATTTACTGTATTTTGAGCCTAAAATCTGA
GCCCATGTCCTCCAACAGGTATAAAATCTTTTGTCCCTCTGCCAGAAAACTAAGAAAGTA
CTGTATTTTGTATGTTTATTATATTGAAGTGTCTGAAATGCAATTTACAGCACTGTTTCA
AAGCTCTTTACATAAGGTAATATTTGTGTAGTATATACATTTTTCTCCCAACCCTCCCCC
TCCTCCAAAAAATTCCTATAAAGCATGTATTTTTTCTACATTGAAATTTCACTGAATATA
GTCCAGAACATGGGCAAGAGGAGAAAATAGTATATCCTAGATGGTAAAAACTTGACTGCG
TGTGTTTGCTCAGTATGAGTAAAACCTCTCCCTTTATCACTGGGAGTTGCACAAACTCAT
GTGGGAAACTTCAGGGCCCAGGGAAGAACTCTAGACAACCTTTGCCTATTTACCGCTTTA
CCTAATTTACAGTCACTTAATCTCACATGTGCTAAAGTAAAGCCCATGATTTAAATCTAT
TTAGAAGGACTTTTACAGAGGAAAAAAAAATTAATATAAAGCTTTACCTTTGAAGTGAGT
TCTTTTTAGGATGCTCTTAGAGTTTCAACATCGCAAGTTAAAAGTTGGTTAACTTGAAAG
TATATGTATAGTATATTTCTATTTTGCTTACTAACAAATTGGTATATCAAACTTAATTAC
AAGAAACTTTGTGCTTAGAATTTTAAGATAAAAGACTAAGTGGCAAATATTTTTTGAAAT
TTGTTTTAATTGTTATTATACGTCTAGTGTAGAATTCCTGATCTTTTTTATTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTTACCGATAATCTACACTTATTGCCAATTTACTGTATTTTGAGCCTAAAATCTGA
GCCCATGTCCTCCAACAGGTATAAAATCTTTTGTCCCTCTGCCAGAAAACTAAGAAAGTA
CTGTATTTTGTATGTTTATTATATTGAAGTGTCTGAAATGCAATTTACAGCACTGTTTCA
AAGCTCTTTACATAAGGTAATATTTGTGTAGTATATACATTTTTCTCCCAACCCTCCCCC
TCCTCCAAAAAATTCCTATAAAGCATGTATTTTTTCTACATTGAAATTTCACTGAATATA
GTCCAGAACATGGGCAAGAGGAGAAAATAGTATATCCTAGATGGTAAAAACTTGACTGCG
TGTGTTTGCTCAGTATGAGTAAAACCTCTCCCTTTATCACTGGGAGTTGCACAAACTCAT
GTGGGAAACTTCAGGGCCCAGGGAAGAACTCTAGACAACCTTTGCCTATTTACCGCTTTA
CCTAATTTACAGTCACTTAATCTCACATGTGCTAAAGTAAAGCCCATGATTTAAATCTAT
TTAGAAGGACTTTTACAGAGGAAAAAAAAATTAATATAAAGCTTTACCTTTGAAGTGAGT
TCTTTTTAGGATGCTCTTAGAGTTTCAACATCGCAAGTTAAAAGTTGGTTAACTTGAAAG
TATATGTATAGTATATTTCTATTTTGCTTACTAACAAATTGGTATATCAAACTTAATTAC
AAGAAACTTTGTGCTTAGAATTTTAAGATAAAAGACTAAGTGGCAAATATTTTTTGAAAT
TTGTTTTAATTGTTATTATACGTCTAGTGTAGAATTCCTGATCTTTTTTATTTAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-840, gnl|bosTau2|chr3 (76818638-76817792)
               

               
               1-840, gnl|Hg17|chr1 (36193254-36194100)
               

               
               1-840, gnl|Mm7|chr4 (125788199-125787287)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr3 (76818638-76817792)
               

               
               1-840, gnl|Hg17|chr1 (36193254-36194100)
               

               
               1-840, gnl|Mm7|chr4 (125788199-125787287)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               fcc (0.197785)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               fcc (0.197785)

	1-840, gnl\|bosTau2\|chr3 (76818638-76817792)
	1-840, gnl\|Hg17\|chr1 (36193254-36194100)
	1-840, gnl\|Mm7\|chr4 (125788199-125787287)