Non-Coding RNA Search

Ss1.1-rsme005_g23.5

Sequence:


               
               AGCCTGCCCCCCAAAAGGGCCCTGACTGAGCGGCAGCTGTGGCCCTCAACAGGCTTACTG
TCAAGGAGGCAGGTGAAGGAGAGATTTCAGCATTTTCTGGACAAAATGAGGGCCCATCAA
TTTGCTGCTGATAGGAAGCCTGGAAAACATGGACAACTGGGATGACGGGCTGTCAACCCT
GGTTGGTACTGGCTGCCTTTTTTCTCTGGCCCTCCCGAGGTCTGGGATGTTTCCTTGTAC
CAAAGATGCTCACACAGATCAAAGTCCAGTGTGCTCCCTCTCATTCCTCACCCACTTGCT
GCAGGTGCTTCTCAGAAGGGAACAGGTGTGGCAGAGGACCTGGCCACTCCCCAGTGGGGA
CAATCAGCTCATGAAAAGCAGGGGGTGCTGTGTGCTTGGCCTTGATCTGGTGTCTGCTGC
TGCTCTTCCCTTCCTAATCAGGCAGCTGGCAACAGCACCCCCATGAGAGCAAGTCACTCC
CTTACAGCCTGGGAAATTCTCTGTGCCTCTGGGTACAAAAGTGCCTGAACTAAAGTACTC
TGGAAACCTAAAAATTGCCATGGTCTGAGGTTGAATGTTTAAAATCTATGCCTTTGAAAC
AGTCTGTGTATTTTATTCTTACCTTGTAGAGCTTGTCTAAACAGCAAAAATAAATGCCTA
ACCTTCCATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGCCCCCCAAAAGGGCCCTGACTGAGCGGCAGCTGTGGCCCTCAACAGGCTTACTG
TCAAGGAGGCAGGTGAAGGAGAGATTTCAGCATTTTCTGGACAAAATGAGGGCCCATCAA
TTTGCTGCTGATAGGAAGCCTGGAAAACATGGACAACTGGGATGACGGGCTGTCAACCCT
GGTTGGTACTGGCTGCCTTTTTTCTCTGGCCCTCCCGAGGTCTGGGATGTTTCCTTGTAC
CAAAGATGCTCACACAGATCAAAGTCCAGTGTGCTCCCTCTCATTCCTCACCCACTTGCT
GCAGGTGCTTCTCAGAAGGGAACAGGTGTGGCAGAGGACCTGGCCACTCCCCAGTGGGGA
CAATCAGCTCATGAAAAGCAGGGGGTGCTGTGTGCTTGGCCTTGATCTGGTGTCTGCTGC
TGCTCTTCCCTTCCTAATCAGGCAGCTGGCAACAGCACCCCCATGAGAGCAAGTCACTCC
CTTACAGCCTGGGAAATTCTCTGTGCCTCTGGGTACAAAAGTGCCTGAACTAAAGTACTC
TGGAAACCTAAAAATTGCCATGGTCTGAGGTTGAATGTTTAAAATCTATGCCTTTGAAAC
AGTCTGTGTATTTTATTCTTACCTTGTAGAGCTTGTCTAAACAGCAAAAATAAATGCCTA
ACCTTCCATGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-158, - strand, RNAz p=0.685402
               

               
               426-545, + strand, RNAz p=0.971566

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.685402
               

               
               426-545, + strand, RNAz p=0.971566

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK024163, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK024163, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-672, gnl|bosTau2|chr2 (44627455-44626786)
               

               
               1-672, gnl|Hg17|chr2 (119738800-119739458)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr2 (44627455-44626786)
               

               
               1-672, gnl|Hg17|chr2 (119738800-119739458)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sme (0.305437)
               

               
               nbm (0.198649)
               

               
               csk (0.140746)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               nbm (0.198649)
               

               
               csk (0.140746)

	40-158, - strand, RNAz p=0.685402
	426-545, + strand, RNAz p=0.971566

	1-672, gnl\|bosTau2\|chr2 (44627455-44626786)
	1-672, gnl\|Hg17\|chr2 (119738800-119739458)