Non-Coding RNA Search

Ss1.1-rsme014_l10.5

Sequence:


               
               ACTCGCTAAAGATGCATCGCCTAAAGCATGAAGGTAAACGCTGTTTCCGGTGCCAGATAT
GTAGTGCCACTTTCACTTCCTTCGGGGAATATAAACACCACATGAGGGTTTCCCGGCACA
TTATCCGCAAGCCTCGGATTTACGAGTGCAAAACATGTGGCGCCATGTTCACCAACTCTG
GAAATTTAATCGTGCACCTGAGGAGTCTGAACCATGAAGCGTCAGAGCTAGCAAACTACT
TCCAGAGCAGGTGAGGTGCACAACAAGACCTGAACCAGGAAAACTGCTTTCTAAACTCTC
TCTTCCTGCTTATAGGGCAGCCTGCTGTGTTTTTGTTTTTGTTTTTTAATCAGGTTGCCA
ACTAATTAGTCACATTCCTTTTAAATTCCCACTATCCAATAATACTCTGATCTCCTGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCGCTAAAGATGCATCGCCTAAAGCATGAAGGTAAACGCTGTTTCCGGTGCCAGATAT
GTAGTGCCACTTTCACTTCCTTCGGGGAATATAAACACCACATGAGGGTTTCCCGGCACA
TTATCCGCAAGCCTCGGATTTACGAGTGCAAAACATGTGGCGCCATGTTCACCAACTCTG
GAAATTTAATCGTGCACCTGAGGAGTCTGAACCATGAAGCGTCAGAGCTAGCAAACTACT
TCCAGAGCAGGTGAGGTGCACAACAAGACCTGAACCAGGAAAACTGCTTTCTAAACTCTC
TCTTCCTGCTTATAGGGCAGCCTGCTGTGTTTTTGTTTTTGTTTTTTAATCAGGTTGCCA
ACTAATTAGTCACATTCCTTTTAAATTCCCACTATCCAATAATACTCTGATCTCCTGATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, - strand, RNAz p=0.903605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.903605

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-419, gnl|bosTau2|chr29 (29024738-29025155)
               

               
               1-419, gnl|Hg17|chr11 (129612147-129611740)
               

               
               1-419, gnl|Mm7|chr9 (30966273-30966678)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-419, gnl|bosTau2|chr29 (29024738-29025155)
               

               
               1-419, gnl|Hg17|chr11 (129612147-129611740)
               

               
               1-419, gnl|Mm7|chr9 (30966273-30966678)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cly (0.120642)

	1-419, gnl\|bosTau2\|chr29 (29024738-29025155)
	1-419, gnl\|Hg17\|chr11 (129612147-129611740)
	1-419, gnl\|Mm7\|chr9 (30966273-30966678)