Non-Coding RNA Search

Ss1.1-rsme015_m22.5

Sequence:


               
               TTTCATCGTGCGCAGGCTCTTCCATCCTCATCCTCACCGACAAAGGAAGGAATCTGAAAC
TCAGTGTCAAACTGAAAACAAGTATGATTCTGTAAGTGCCGAAGCTAACGACAATAACTG
GAATGATGTAAAAAATTCCGGATATGTATCACGATATCTAACAGATTTTGAACCAATTCA
GTGCATGGGTCGTGGGGGGTTTGGAGTTGTCTTTGAAGCTAGAAACAAAGTAGACGACTG
CAATTATGCCATCAAGAGAATCCGTCTCCCGAACAGGGAATTGGCTCGGGAAAAGGTAAT
GCGAGAAGTTAAAGCCTTAGCCAAGCTTGAACACCCAGGAATTGATAGATATTTCAATGC
TTGGCTGGAAGCACCACCAGAGAAGTGGCAAGAAAAAATGGATGAAATTTGGCTGAAAGA
TGAAAGCACAGACTGGCCACTCAGTTCGCCGAGTCCAATGGATGCACCATCCGTTAAAAT
ACGCAGAGTGGATCCTGGCTCTACCAAGGAACATATTGAAATCATAGCTCCTTCACCACG
AAGCAGCAGGTCTTTCTCTATGGGGATTTCCTGTGGCCAGACGAGTTCATCGGAGAGCCA
GTTCTCTCCCCTGGAACTTTCCGGAATGGACCATGGAGATGCCAGCCAGTCAGTGGATGC
AGCGTACAACCTCCAGGACAGCTGCCTTACAGACTGTGACTTGGAGGACGGTACTCTGGA
CGGCAGCAATGATGGGCACTCCTTTGAACTTTGTCCTTCTGAATCTTCTCCCTACATCAG
GTCTAGGGAGCGAACCTCCTCTTCCATAGTGTTTGAAGATTCTGGCTGTGATAACGCATC
CAGCAAAGAAGAGCCCAGAATGAACCGACTGCCTATTGGCAACCACTGTGCTAATAAACT
CACTGCACTCCAGCATTCCAGTAGCAAATCTTCCTCTGAACCTACTCTGTCTATTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATCGTGCGCAGGCTCTTCCATCCTCATCCTCACCGACAAAGGAAGGAATCTGAAAC
TCAGTGTCAAACTGAAAACAAGTATGATTCTGTAAGTGCCGAAGCTAACGACAATAACTG
GAATGATGTAAAAAATTCCGGATATGTATCACGATATCTAACAGATTTTGAACCAATTCA
GTGCATGGGTCGTGGGGGGTTTGGAGTTGTCTTTGAAGCTAGAAACAAAGTAGACGACTG
CAATTATGCCATCAAGAGAATCCGTCTCCCGAACAGGGAATTGGCTCGGGAAAAGGTAAT
GCGAGAAGTTAAAGCCTTAGCCAAGCTTGAACACCCAGGAATTGATAGATATTTCAATGC
TTGGCTGGAAGCACCACCAGAGAAGTGGCAAGAAAAAATGGATGAAATTTGGCTGAAAGA
TGAAAGCACAGACTGGCCACTCAGTTCGCCGAGTCCAATGGATGCACCATCCGTTAAAAT
ACGCAGAGTGGATCCTGGCTCTACCAAGGAACATATTGAAATCATAGCTCCTTCACCACG
AAGCAGCAGGTCTTTCTCTATGGGGATTTCCTGTGGCCAGACGAGTTCATCGGAGAGCCA
GTTCTCTCCCCTGGAACTTTCCGGAATGGACCATGGAGATGCCAGCCAGTCAGTGGATGC
AGCGTACAACCTCCAGGACAGCTGCCTTACAGACTGTGACTTGGAGGACGGTACTCTGGA
CGGCAGCAATGATGGGCACTCCTTTGAACTTTGTCCTTCTGAATCTTCTCCCTACATCAG
GTCTAGGGAGCGAACCTCCTCTTCCATAGTGTTTGAAGATTCTGGCTGTGATAACGCATC
CAGCAAAGAAGAGCCCAGAATGAACCGACTGCCTATTGGCAACCACTGTGCTAATAAACT
CACTGCACTCCAGCATTCCAGTAGCAAATCTTCCTCTGAACCTACTCTGTCTATTTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884303|ref|XP_610680.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884303|ref|XP_610680.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               155-281, gnl|bosTau2|chr11 (36166354-36166228)
               

               
               155-281, gnl|Hg17|chr2 (88718419-88718293)
               

               
               155-281, gnl|Mm7|chr6 (70907477-70907603)
               


               
               425-960, gnl|bosTau2|chr11 (36160328-36159796)
               

               
               425-960, gnl|Hg17|chr2 (88714228-88713693)
               

               
               425-960, gnl|Mm7|chr6 (70910354-70910895)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-281, gnl|bosTau2|chr11 (36166354-36166228)
               

               
               155-281, gnl|Hg17|chr2 (88718419-88718293)
               

               
               155-281, gnl|Mm7|chr6 (70907477-70907603)
               


               
               425-960, gnl|bosTau2|chr11 (36160328-36159796)
               

               
               425-960, gnl|Hg17|chr2 (88714228-88713693)
               

               
               425-960, gnl|Mm7|chr6 (70910354-70910895)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sme (0.305437)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	155-281, gnl\|bosTau2\|chr11 (36166354-36166228)
	155-281, gnl\|Hg17\|chr2 (88718419-88718293)
	155-281, gnl\|Mm7\|chr6 (70907477-70907603)

	425-960, gnl\|bosTau2\|chr11 (36160328-36159796)
	425-960, gnl\|Hg17\|chr2 (88714228-88713693)
	425-960, gnl\|Mm7\|chr6 (70910354-70910895)