Ss1.1-rsme016_o6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGACTTAGATGATGATATAACAGCCCTCAAGCAGAGGAGCTTCGTGGATGCTGAAGTGG ACGTGACCCGAGATATTGTCAGCAGAGAGCGAGTGTGGAGGACTCGAACGACCATCTTAC AGAGCACGGGGAAGAACTTTTCCAAGAATATTTTCGCAATTCTTCAATCAGTGAAGGCCA GAGAAGAAGGGCGTGCACCCGAGCAGCGGCCGGCCCCGAACGCGGCACCTGTGGATCCCA CGTTGCGTACCAAACAGCCCATTCCAGCTGCCTACAACAGATACGACCAGGAGAGATTCA AAGGGAAAGAAGAAACGGAAGGCTTCAAAATTGACACGATGGGCACCTACCACGGGATGA CGCTCAAGTCGGTGACGGAGGGTGCATCGGCTCGTAAGACACAGACTCCTGCAGCACAAC CAGTACCAAGACCAGTTTCTCAAGCCAGACCTCCCCCAAATCAGAAGAAAGGATCTCGAA CACCTATTATCATAATTCCTGCAGCTACCACTTCTTTAATAACGATGCTTAACGCAAAGG ACCTTCTGCAGGACCTGAAATTTGTCCCATCAGATGAAAAGAAGAAACAAGGCTGCCAAC GAGAAAATGAAACCCTGATACAGAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAA TTAGTGTCACAGTTCCCTACAGAGTAGTAGACCAGCCCCTTAAACTAATGCCTCAAGACT GGGACCGGGTTGTGGCAGTTTTCGTGCAGGGTCCTGCATGGCAGTTCAAAGGCTGGCCGT GGCTCTTGCCTGATGGATCACCAGTGGACATATTTGCTAAAATTAAAGCCTTCCATCTCA AGTATGACGAAGTTCGCCTGGATCCGAACGTTCAGAAGTGGGACGTGACAGTGCTGGAAC TCAGCTACCACAAACGCCACCTGGACAGACCCGTTTTCTTACGATTCTGGGAGACACTGG ATAGGTACATGGTAAAGCACAAATCCCATTTGAGATTCTGAATTACTTGATTTCCTCCCT TTCTGGAAATCTGGATTAAGAAGCATGGATATACCTTGATCTAAAGACTGAGACTCAAGC TTTATGAATTTATCAAGAACTTACAAATGAAGAAGGTTACAGATCGATCTTTTATAAAAC CTTATTTGATGATTTATGCTTCAAAGGGGTGATGCCTGTCATCCATATAAGCAAACTTTT TGGCTTATAACTATTTTTTTAATATTAGCCTTTTAGTCTGTAATGGAAATTGTATATTTT GATAGAAGTTTTTTCTCCATTGGTTATATTAGCATTACTTAAAATTTGTTTCTTTAGAAA ATAAATGCAGGTTACAAAATGTGTGTATATTTAGAGGTTATAAGGCTCTCTAAGCCATCT TGCTTCTGATTTTTCATTGCTCTATACTTCCTTTTATTGAAAATACTATGTTATGAATGG TATTAAATTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGACTTAGATGATGATATAACAGCCCTCAAGCAGAGGAGCTTCGTGGATGCTGAAGTGG ACGTGACCCGAGATATTGTCAGCAGAGAGCGAGTGTGGAGGACTCGAACGACCATCTTAC AGAGCACGGGGAAGAACTTTTCCAAGAATATTTTCGCAATTCTTCAATCAGTGAAGGCCA GAGAAGAAGGGCGTGCACCCGAGCAGCGGCCGGCCCCGAACGCGGCACCTGTGGATCCCA CGTTGCGTACCAAACAGCCCATTCCAGCTGCCTACAACAGATACGACCAGGAGAGATTCA AAGGGAAAGAAGAAACGGAAGGCTTCAAAATTGACACGATGGGCACCTACCACGGGATGA CGCTCAAGTCGGTGACGGAGGGTGCATCGGCTCGTAAGACACAGACTCCTGCAGCACAAC CAGTACCAAGACCAGTTTCTCAAGCCAGACCTCCCCCAAATCAGAAGAAAGGATCTCGAA CACCTATTATCATAATTCCTGCAGCTACCACTTCTTTAATAACGATGCTTAACGCAAAGG ACCTTCTGCAGGACCTGAAATTTGTCCCATCAGATGAAAAGAAGAAACAAGGCTGCCAAC GAGAAAATGAAACCCTGATACAGAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAA TTAGTGTCACAGTTCCCTACAGAGTAGTAGACCAGCCCCTTAAACTAATGCCTCAAGACT GGGACCGGGTTGTGGCAGTTTTCGTGCAGGGTCCTGCATGGCAGTTCAAAGGCTGGCCGT GGCTCTTGCCTGATGGATCACCAGTGGACATATTTGCTAAAATTAAAGCCTTCCATCTCA AGTATGACGAAGTTCGCCTGGATCCGAACGTTCAGAAGTGGGACGTGACAGTGCTGGAAC TCAGCTACCACAAACGCCACCTGGACAGACCCGTTTTCTTACGATTCTGGGAGACACTGG ATAGGTACATGGTAAAGCACAAATCCCATTTGAGATTCTGAATTACTTGATTTCCTCCCT TTCTGGAAATCTGGATTAAGAAGCATGGATATACCTTGATCTAAAGACTGAGACTCAAGC TTTATGAATTTATCAAGAACTTACAAATGAAGAAGGTTACAGATCGATCTTTTATAAAAC CTTATTTGATGATTTATGCTTCAAAGGGGTGATGCCTGTCATCCATATAAGCAAACTTTT TGGCTTATAACTATTTTTTTAATATTAGCCTTTTAGTCTGTAATGGAAATTGTATATTTT GATAGAAGTTTTTTCTCCATTGGTTATATTAGCATTACTTAAAATTTGTTTCTTTAGAAA ATAAATGCAGGTTACAAAATGTGTGTATATTTAGAGGTTATAAGGCTCTCTAAGCCATCT TGCTTCTGATTTTTCATTGCTCTATACTTCCTTTTATTGAAAATACTATGTTATGAATGG TATTAAATTTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-134, gnl|bosTau2|chr16 (4680980-4680849) | |
| 3-134, gnl|canFam2|chr38 (8914136-8914045) | |
| 3-134, gnl|danRer3|chr2 (4592895-4592983) | |
| 3-134, gnl|dasNov1|scaffold_140902 (780-871) | |
| 3-134, gnl|echTel1|scaffold_164113 (5188-5097) | |
| 3-134, gnl|fr1|chrUn (98311686-98311598) | |
| 3-134, gnl|galGal2|chr8 (3419496-3419405) | |
| 3-134, gnl|hg17|chr1 (189842717-189842808) | |
| 3-134, gnl|Hg17|chr1 (189842722-189842853) | |
| 3-134, gnl|loxAfr1|scaffold_23511 (6769-6678) | |
| 3-134, gnl|mm7|chr1 (143604058-143603967) | |
| 3-134, gnl|Mm7|chr1 (143604051-143603920) | |
| 3-134, gnl|monDom2|scaffold_16 (50338976-50339067) | |
| 3-134, gnl|oryCun1|scaffold_110173 (4398-4489) | |
| 3-134, gnl|panTro1|chr5 (82175661-82175752) | |
| 3-134, gnl|rheMac2|chr1 (177458458-177458367) | |
| 3-134, gnl|rn3|chr13 (57524938-57524847) | |
| 3-134, gnl|tetNig1|chr15 (3336254-3336166) | |
| 3-134, gnl|xenTro1|scaffold_81 (469318-469227) | |
| 560-722, gnl|bosTau2|chr16 (5076234-5076396) | |
| 560-722, gnl|Hg17|chr1 (189933780-189933942) | |
| 560-722, gnl|Mm7|chr1 (143543721-143543559) | |
| 963-1452, gnl|bosTau2|chr16 (5086694-5087199) | |
| 963-1452, gnl|Hg17|chr1 (189951461-189951906) | |
| 963-1452, gnl|Mm7|chr1 (143534840-143534358) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-134, gnl|bosTau2|chr16 (4680980-4680849) | |
| 3-134, gnl|canFam2|chr38 (8914136-8914045) | |
| 3-134, gnl|danRer3|chr2 (4592895-4592983) | |
| 3-134, gnl|dasNov1|scaffold_140902 (780-871) | |
| 3-134, gnl|echTel1|scaffold_164113 (5188-5097) | |
| 3-134, gnl|fr1|chrUn (98311686-98311598) | |
| 3-134, gnl|galGal2|chr8 (3419496-3419405) | |
| 3-134, gnl|hg17|chr1 (189842717-189842808) | |
| 3-134, gnl|Hg17|chr1 (189842722-189842853) | |
| 3-134, gnl|loxAfr1|scaffold_23511 (6769-6678) | |
| 3-134, gnl|mm7|chr1 (143604058-143603967) | |
| 3-134, gnl|Mm7|chr1 (143604051-143603920) | |
| 3-134, gnl|monDom2|scaffold_16 (50338976-50339067) | |
| 3-134, gnl|oryCun1|scaffold_110173 (4398-4489) | |
| 3-134, gnl|panTro1|chr5 (82175661-82175752) | |
| 3-134, gnl|rheMac2|chr1 (177458458-177458367) | |
| 3-134, gnl|rn3|chr13 (57524938-57524847) | |
| 3-134, gnl|tetNig1|chr15 (3336254-3336166) | |
| 3-134, gnl|xenTro1|scaffold_81 (469318-469227) | |
| 560-722, gnl|bosTau2|chr16 (5076234-5076396) | |
| 560-722, gnl|Hg17|chr1 (189933780-189933942) | |
| 560-722, gnl|Mm7|chr1 (143543721-143543559) | |
| 963-1452, gnl|bosTau2|chr16 (5086694-5087199) | |
| 963-1452, gnl|Hg17|chr1 (189951461-189951906) | |
| 963-1452, gnl|Mm7|chr1 (143534840-143534358) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cte (0.58548) | |
| sme (0.305437) | |
| kid (0.259471) | |
| thg (0.253582) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ill (0.175593) | |
| ova (0.129132) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| sme (0.305437) | |
| kid (0.259471) | |
| thg (0.253582) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ill (0.175593) | |
| ova (0.129132) | |
| eep (0.122564) | |
| pgl (0.118483) |