Non-Coding RNA Search

Ss1.1-rsme023_j9.5

Sequence:


               
               AGGGGCTCGAGAGAAGTTGCGCTGTAGGTCATGGGACCAGCAGAAGCTGAGGTTTAGGAA
TGAAAGACTTCATTGATTTACCAATTCTCTAATCATGGCACAGGTAGAGAAACGAGGAGG
TTTGCTTCGGAAATCTTCAGCCTCCAAAAAACCACTGAAGGAAAAAGTGGTGCTGATGTA
TGATGAGATCTTCATGACAGAAGACCCTAGTAAGTGCAGTCCTCGATTTTGGGAGGAGCT
CTTCCTTATGAAGGTGAATTTAGAGTACCTAGAAGGCAAGCTGGAATCTCTGGATGGTGA
AGAGTTAATGAAGATCAAGGACAATATTAATTGCTTATTTCAACACTGCATCCAGGCTCT
GGGAGAGGAGCATCCGATTCGAGTGGTCAATGCATTGCAGACCTTGTGTGCACTTATTCG
AGGAGTCCATCAAAAGAATAAGTCTACCTCTGGGTTTGACATTATCAACATGCTAATGGG
CTTTGACAAGGCGGAGCTGTGCATGAAGGTGAGATATAAGCTGCAGATGTGCCTGCGGAT
GTCTGCTTACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCTCGAGAGAAGTTGCGCTGTAGGTCATGGGACCAGCAGAAGCTGAGGTTTAGGAA
TGAAAGACTTCATTGATTTACCAATTCTCTAATCATGGCACAGGTAGAGAAACGAGGAGG
TTTGCTTCGGAAATCTTCAGCCTCCAAAAAACCACTGAAGGAAAAAGTGGTGCTGATGTA
TGATGAGATCTTCATGACAGAAGACCCTAGTAAGTGCAGTCCTCGATTTTGGGAGGAGCT
CTTCCTTATGAAGGTGAATTTAGAGTACCTAGAAGGCAAGCTGGAATCTCTGGATGGTGA
AGAGTTAATGAAGATCAAGGACAATATTAATTGCTTATTTCAACACTGCATCCAGGCTCT
GGGAGAGGAGCATCCGATTCGAGTGGTCAATGCATTGCAGACCTTGTGTGCACTTATTCG
AGGAGTCCATCAAAAGAATAAGTCTACCTCTGGGTTTGACATTATCAACATGCTAATGGG
CTTTGACAAGGCGGAGCTGTGCATGAAGGTGAGATATAAGCTGCAGATGTGCCTGCGGAT
GTCTGCTTACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822935|ref|XP_589198.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822935|ref|XP_589198.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               77-196, gnl|bosTau2|chr26 (14433989-14434108)
               

               
               77-196, gnl|Hg17|chr10 (103789879-103789760)
               

               
               77-196, gnl|Mm7|chr19 (45875619-45875503)
               


               
               396-548, gnl|bosTau2|chr26 (14437414-14437566)
               

               
               396-548, gnl|Hg17|chr10 (103779497-103779345)
               

               
               396-548, gnl|Mm7|chr19 (45869838-45869690)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-196, gnl|bosTau2|chr26 (14433989-14434108)
               

               
               77-196, gnl|Hg17|chr10 (103789879-103789760)
               

               
               77-196, gnl|Mm7|chr19 (45875619-45875503)
               


               
               396-548, gnl|bosTau2|chr26 (14437414-14437566)
               

               
               396-548, gnl|Hg17|chr10 (103779497-103779345)
               

               
               396-548, gnl|Mm7|chr19 (45869838-45869690)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ret (0.128733)

	77-196, gnl\|bosTau2\|chr26 (14433989-14434108)
	77-196, gnl\|Hg17\|chr10 (103789879-103789760)
	77-196, gnl\|Mm7\|chr19 (45875619-45875503)

	396-548, gnl\|bosTau2\|chr26 (14437414-14437566)
	396-548, gnl\|Hg17\|chr10 (103779497-103779345)
	396-548, gnl\|Mm7\|chr19 (45869838-45869690)