Non-Coding RNA Search

Ss1.1-rsme025_o1.5

Sequence:


               
               AGAAGTCAGAGGCCATCCTCAGAGAGCTGGACGTGGAGAACGCCAAGCTCTACCTGGACT
TCATCGTGCTGGGCATTTTCTTCATCTCCCTGCGTCTCATCGCCTACCTCGTGCTGAGGT
ACAAAATCCGGGCCGAGAGGTAAAGCCCCTGGATGTTGGGGGACAGGAGAACTGGACGCT
GCGGCCAAGGGCCACTTCCAGAACCGGCGGCAAGCCCAGGCCTGAGGACACAGACGCCCC
TTTGCCCCCACCCCCCGGGGACCACGTGTGGTGGCCGGGCGGCCAGTGGTGGATGTTGCC
GCCTGGCTGGGGTGGGTCCTTTCCCCATCACCCTTTCTAGTTCTACCTAGGAAGACGATG
TAGGAAGTTTTTTGGTTTTTGTTTTTTTCACATGCAAAATTGTCAAATATCACAACCGGG
GCAGAATTTTAAACGGCAACGGAGCTGGTGATGAGAGGCTTCCTTGGCAAAATTCTCCCT
TCTGACCCGGAAGCTCTGGTCCCGGCCCGGGGACTCAGGCAGCTCCCGGGGGTCCCTGGG
CAGTCAGATGTCTGGGAGCGGAAGGCGAAGCTTGGAGAGATTCCATTCTGTGACTGGTGT
TTTCGTAGTTCCATCTTTCTGCAATTTGCCTCTTTTTTTTTCCAACGAGAAGTCATTTTC
CAAGCCACGAGGGGATCAGTTTCATGCTTTTCAGAACCTGCACCTTTTTCGTCCTGGTTG
AAGACAGTTATTCAGGGTAAATAACCTCCTTTGTTTGGAGATGTGAGGGGTTTTACCTCA
TCACTGAGCTGGTCCCATTGGCAGATGGAACTTGAGGAAGATGCTGATGTGGGCTCCAGG
TCAAAGGCAGACTTTGCTGGCGCTTTGCTATGCGCTCAGCCCTGCAGACATTTCCAAAAG
GAACACAGAAAGTCGGAAGGCGAGATCGGCCATCTCTTTCAAAGTCTTTTATTTTCCCCA
GGTTTCTGATTTCGAGCAAACTGTACGGAGTTTTTTTTTTTTTCTTCCTAACTTTCCGAG
CATCTTCATTTTTGCCTGAAAAAGACTCTAGAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCAGAGGCCATCCTCAGAGAGCTGGACGTGGAGAACGCCAAGCTCTACCTGGACT
TCATCGTGCTGGGCATTTTCTTCATCTCCCTGCGTCTCATCGCCTACCTCGTGCTGAGGT
ACAAAATCCGGGCCGAGAGGTAAAGCCCCTGGATGTTGGGGGACAGGAGAACTGGACGCT
GCGGCCAAGGGCCACTTCCAGAACCGGCGGCAAGCCCAGGCCTGAGGACACAGACGCCCC
TTTGCCCCCACCCCCCGGGGACCACGTGTGGTGGCCGGGCGGCCAGTGGTGGATGTTGCC
GCCTGGCTGGGGTGGGTCCTTTCCCCATCACCCTTTCTAGTTCTACCTAGGAAGACGATG
TAGGAAGTTTTTTGGTTTTTGTTTTTTTCACATGCAAAATTGTCAAATATCACAACCGGG
GCAGAATTTTAAACGGCAACGGAGCTGGTGATGAGAGGCTTCCTTGGCAAAATTCTCCCT
TCTGACCCGGAAGCTCTGGTCCCGGCCCGGGGACTCAGGCAGCTCCCGGGGGTCCCTGGG
CAGTCAGATGTCTGGGAGCGGAAGGCGAAGCTTGGAGAGATTCCATTCTGTGACTGGTGT
TTTCGTAGTTCCATCTTTCTGCAATTTGCCTCTTTTTTTTTCCAACGAGAAGTCATTTTC
CAAGCCACGAGGGGATCAGTTTCATGCTTTTCAGAACCTGCACCTTTTTCGTCCTGGTTG
AAGACAGTTATTCAGGGTAAATAACCTCCTTTGTTTGGAGATGTGAGGGGTTTTACCTCA
TCACTGAGCTGGTCCCATTGGCAGATGGAACTTGAGGAAGATGCTGATGTGGGCTCCAGG
TCAAAGGCAGACTTTGCTGGCGCTTTGCTATGCGCTCAGCCCTGCAGACATTTCCAAAAG
GAACACAGAAAGTCGGAAGGCGAGATCGGCCATCTCTTTCAAAGTCTTTTATTTTCCCCA
GGTTTCTGATTTCGAGCAAACTGTACGGAGTTTTTTTTTTTTTCTTCCTAACTTTCCGAG
CATCTTCATTTTTGCCTGAAAAAGACTCTAGAAGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               505-614, + strand, RNAz p=0.789539

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               505-614, + strand, RNAz p=0.789539

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY048757, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY048757, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1054, gnl|bosTau2|chr1 (92739159-92740185)
               

               
               1-1054, gnl|Hg17|chr21 (42589429-42590451)
               

               
               1-1054, gnl|Mm7|chr17 (29309355-29310344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1054, gnl|bosTau2|chr1 (92739159-92740185)
               

               
               1-1054, gnl|Hg17|chr21 (42589429-42590451)
               

               
               1-1054, gnl|Mm7|chr17 (29309355-29310344)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sme (0.610874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)

	1-1054, gnl\|bosTau2\|chr1 (92739159-92740185)
	1-1054, gnl\|Hg17\|chr21 (42589429-42590451)
	1-1054, gnl\|Mm7\|chr17 (29309355-29310344)