Non-Coding RNA Search

Ss1.1-rsme026_e20.5

Sequence:


               
               AAATTTTGTATGTTTAAGCAAAGTGATCATTGTTAAATATCTGTGACATTAGGACGTGCA
TCGTCTCTTTTCAGAGATGTGCTGGTAAACTCGAGTGGGGTTAACTCAGTACCCTGGAAG
GAGTGCAGCTCCCGAGGTCGGCTTCTCTACTTCATGCTGATCTGTCTTAAAGCAGACCTA
CCATGTGTTGTTACATTTGTGAACAGTGTGAATGTATCTCATCCCACCAATGTCAGAGCA
AAATTACTTTTTTATATTCATTTATTTTTCAAAAAGAGATCCTAAAAATAAGAATAAGAC
TAACACTTTGTCAGTGTTTTTCAAAATTGAGGTATTTTAAGATCGTGTTGTTCCTAAGTA
ATGTTCAAATAGTGATAGGTACTCAGTGATAGGTACCCCTTGTATTTTCTCCTAGGAAAA
CTGTTAAAAGGCAAAGGTTACCACTAAGAGTATCAAGTCAAATGTCACGAAAGTATTTCC
AGTGTTGACAATAAATGCATGTGCCTCAAGTTAAACTGTGCAAAATTTGTTAGCTTCTTG
GGCTTTAACCTCTGAAATATATATCAAGTTAAACTTAGTCATGGCTGTTCTAAGAAGTAC
TTAAGGAGAAAAGTTCATTTTTTATATGTGTTTTGTACCTGCATATACATGCAAAAACGC
TTTTACCAAATTATTCATTAAAGTCCAGTTGTTGACCTTTGAGTTGTCTGATTCACTTAC
TCTGTTCTTTGGTTGCTCCACACTGGATGCAGAGCAATTCATTTACATTTGTTAGTAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTTTGTATGTTTAAGCAAAGTGATCATTGTTAAATATCTGTGACATTAGGACGTGCA
TCGTCTCTTTTCAGAGATGTGCTGGTAAACTCGAGTGGGGTTAACTCAGTACCCTGGAAG
GAGTGCAGCTCCCGAGGTCGGCTTCTCTACTTCATGCTGATCTGTCTTAAAGCAGACCTA
CCATGTGTTGTTACATTTGTGAACAGTGTGAATGTATCTCATCCCACCAATGTCAGAGCA
AAATTACTTTTTTATATTCATTTATTTTTCAAAAAGAGATCCTAAAAATAAGAATAAGAC
TAACACTTTGTCAGTGTTTTTCAAAATTGAGGTATTTTAAGATCGTGTTGTTCCTAAGTA
ATGTTCAAATAGTGATAGGTACTCAGTGATAGGTACCCCTTGTATTTTCTCCTAGGAAAA
CTGTTAAAAGGCAAAGGTTACCACTAAGAGTATCAAGTCAAATGTCACGAAAGTATTTCC
AGTGTTGACAATAAATGCATGTGCCTCAAGTTAAACTGTGCAAAATTTGTTAGCTTCTTG
GGCTTTAACCTCTGAAATATATATCAAGTTAAACTTAGTCATGGCTGTTCTAAGAAGTAC
TTAAGGAGAAAAGTTCATTTTTTATATGTGTTTTGTACCTGCATATACATGCAAAAACGC
TTTTACCAAATTATTCATTAAAGTCCAGTTGTTGACCTTTGAGTTGTCTGATTCACTTAC
TCTGTTCTTTGGTTGCTCCACACTGGATGCAGAGCAATTCATTTACATTTGTTAGTAACT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               3-291, gnl|bosTau2|chr11 (79692604-79692317)
               

               
               3-291, gnl|Hg17|chr13 (36300504-36300824)
               


               
               339-774, gnl|bosTau2|chr11 (79692296-79691839)
               

               
               339-774, gnl|Hg17|chr13 (36300868-36301314)
               

               
               339-774, gnl|Mm7|chr3 (54932760-54932264)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-291, gnl|bosTau2|chr11 (79692604-79692317)
               

               
               3-291, gnl|Hg17|chr13 (36300504-36300824)
               


               
               339-774, gnl|bosTau2|chr11 (79692296-79691839)
               

               
               339-774, gnl|Hg17|chr13 (36300868-36301314)
               

               
               339-774, gnl|Mm7|chr3 (54932760-54932264)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               mgp (0.692042)
               

               
               vin (0.665115)
               

               
               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.692042)
               

               
               vin (0.665115)
               

               
               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	3-291, gnl\|bosTau2\|chr11 (79692604-79692317)
	3-291, gnl\|Hg17\|chr13 (36300504-36300824)

	339-774, gnl\|bosTau2\|chr11 (79692296-79691839)
	339-774, gnl\|Hg17\|chr13 (36300868-36301314)
	339-774, gnl\|Mm7\|chr3 (54932760-54932264)

	mgp (0.692042)
	vin (0.665115)
	cbe (0.478469)
	hea (0.408998)
	sag (0.36543)
	sme (0.305437)
	ova (0.258264)
	ret (0.257467)
	tra (0.246184)
	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	sug (0.127291)
	spc (0.113366)