Non-Coding RNA Search

Ss1.1-rsme026_o22.5

Sequence:


               
               GGAAGAGGGGGCCGCGTCTCCCCGTGGCTCCTTTCCGTCTCTCCCCGGCCAGCGTGGCTG
TCGCCTGGCGGTGGGTCCTGGGCGTGTGGCACCTGCCATCCCACGGGGCTGTGCCCGGCA
GCCCCCACTGCTTGTCAAACCAGCCTCGGGACAGGCTTGCCTGCACTTCTGTAACATAGG
ACTTCGCTGTGCTCCCTGGAGGTTTTATATGGTGATTTGTATTTAAATCTTAAGACTTTA
TTTTCTCACTCTTGGCATACCTTCCAGATGTATGTGAAAGTCTAAATATATTTTAAATAT
TGTATGGGAGGTATAAGGCTGACATATATTCAGTGCTGTAGTGTTGAGCTTAGTTTGACT
TCCGTTTTGACTAAGGATGACATTAATTGTTAGCTGTTTTGAAAGTATATATATATAATT
ATAAATATATAAATATATAAATATAGGCCAGTCTTGGCTGAAATGTTTTATTGATGATAG
TTTTATACCCATGTGGTGCTTTGGGCCAGCCTGGGATGCGGAACGAGAGAGCTGCTCAGT
AATGCAGTTTGCGACATGAATAGTATTGTAAAGTTACAATGAGAAAAACAAACAAAAAAA
AGAACAAAAAGCAACACTATTCCAGGCTGTAACTCTGTGCACAAGACACACAGTTGTATT
TCAGAGAGTTCTTTCAATTTGTAAGTTATTTTTTTTAATAAAGTTTTTTTTTTTTTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAGGGGGCCGCGTCTCCCCGTGGCTCCTTTCCGTCTCTCCCCGGCCAGCGTGGCTG
TCGCCTGGCGGTGGGTCCTGGGCGTGTGGCACCTGCCATCCCACGGGGCTGTGCCCGGCA
GCCCCCACTGCTTGTCAAACCAGCCTCGGGACAGGCTTGCCTGCACTTCTGTAACATAGG
ACTTCGCTGTGCTCCCTGGAGGTTTTATATGGTGATTTGTATTTAAATCTTAAGACTTTA
TTTTCTCACTCTTGGCATACCTTCCAGATGTATGTGAAAGTCTAAATATATTTTAAATAT
TGTATGGGAGGTATAAGGCTGACATATATTCAGTGCTGTAGTGTTGAGCTTAGTTTGACT
TCCGTTTTGACTAAGGATGACATTAATTGTTAGCTGTTTTGAAAGTATATATATATAATT
ATAAATATATAAATATATAAATATAGGCCAGTCTTGGCTGAAATGTTTTATTGATGATAG
TTTTATACCCATGTGGTGCTTTGGGCCAGCCTGGGATGCGGAACGAGAGAGCTGCTCAGT
AATGCAGTTTGCGACATGAATAGTATTGTAAAGTTACAATGAGAAAAACAAACAAAAAAA
AGAACAAAAAGCAACACTATTCCAGGCTGTAACTCTGTGCACAAGACACACAGTTGTATT
TCAGAGAGTTCTTTCAATTTGTAAGTTATTTTTTTTAATAAAGTTTTTTTTTTTTTTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               411-562, - strand, RNAz p=0.995599

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-562, - strand, RNAz p=0.995599

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-714, gnl|bosTau2|chr18 (39151462-39150879)
               

               
               120-714, gnl|Hg17|chr2 (237272403-237272989)
               

               
               120-714, gnl|Mm7|chr1 (90119962-90120494)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-714, gnl|bosTau2|chr18 (39151462-39150879)
               

               
               120-714, gnl|Hg17|chr2 (237272403-237272989)
               

               
               120-714, gnl|Mm7|chr1 (90119962-90120494)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fat (0.737137)
               

               
               sme (0.305437)
               

               
               cov (0.264306)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.737137)
               

               
               sme (0.305437)
               

               
               cov (0.264306)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)

	120-714, gnl\|bosTau2\|chr18 (39151462-39150879)
	120-714, gnl\|Hg17\|chr2 (237272403-237272989)
	120-714, gnl\|Mm7\|chr1 (90119962-90120494)

	fat (0.737137)
	sme (0.305437)
	cov (0.264306)
	mgm (0.180343)
	duo (0.172801)
	tbr (0.154178)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	sug (0.127291)