Non-Coding RNA Search

Ss1.1-rsme035_c23.5

Sequence:


               
               AACAAACCTGCTTGATCTCCCACTTTAAGTCTATACCCAGCTACCTGTTCTACCTTTTGG
TGGAATTGCCACAGGTGAATCACTGTTCCAAGTTGAACTGTTGTTCAATTATGACTCACG
CAAAACATTCGAAGAGTAATCCTTCCACTTGCTTGGTCTTTTACTTCATTTTCACTTGAG
TGTTTTTCCAGTCATTGATTGTGTTCCTGTCAGTGCCCCGGTCGGTGTGGGTTTCTCAGC
TGCACCACTGGTGGTAAAGGCAGTGAGCTGTCTCTGGTCTCTTTACACCAGCCTGCCTGA
GGCACAGATCTGCATCCTTCTGTTTTTCGCAGAATAAAACCCGAATGTGTTCAGTCATTT
TTCAAGGCCCTACATTATCTGAAGAGATTTCCCCTCCCTTCCTTCCAAAGAAGCATTTTT
GAAAAGCTTTGGGCGTTCTGGCCCTTGTGTCGGCCTTAAACCCCCAGGGGTATGGAGGTA
GTCAGAACCTTGCGGGGGGCTTTCGGTAGTTTTAAAATTCTCTTTTTTGCGTATTTAACA
TTCTCTGAGCGATGTTGATGACCAGGACTTGGAGCCTTGCTGGAAGAGAGAGGAGCTTTG
CCCGAGACTAGAGTCACATCCCGACAGTCCTTGTCCTGGTGTGCTACAGTCCTCGGAGAG
AATCTGCTGGTCTCGATTCACTGGCGAGGGCAGTCAGTGCCCCCGGGAGTGCCCAGATCA
GAAACATGCCCTTGGCGCTTCCTGGATGGAGTGGGTTAGCAGGCGTCTTTCTTCGTACCC
ATCACAGAGTTGGTGACTGTCATGGTGCGTCATAAACCCTTTTCTCTGTTCTTCCAGGGT
TACTACAAAGTTCTGGGGAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAA
TTTTTCAGCAGACGAGCTGAAGAGAAGATTAAGGGTGTCGGGGGGGCCTGTGTCCTGGTA
GCTTGAAACCACATGGTGGGAAACTCATTAAATGTTGACAAGTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAACCTGCTTGATCTCCCACTTTAAGTCTATACCCAGCTACCTGTTCTACCTTTTGG
TGGAATTGCCACAGGTGAATCACTGTTCCAAGTTGAACTGTTGTTCAATTATGACTCACG
CAAAACATTCGAAGAGTAATCCTTCCACTTGCTTGGTCTTTTACTTCATTTTCACTTGAG
TGTTTTTCCAGTCATTGATTGTGTTCCTGTCAGTGCCCCGGTCGGTGTGGGTTTCTCAGC
TGCACCACTGGTGGTAAAGGCAGTGAGCTGTCTCTGGTCTCTTTACACCAGCCTGCCTGA
GGCACAGATCTGCATCCTTCTGTTTTTCGCAGAATAAAACCCGAATGTGTTCAGTCATTT
TTCAAGGCCCTACATTATCTGAAGAGATTTCCCCTCCCTTCCTTCCAAAGAAGCATTTTT
GAAAAGCTTTGGGCGTTCTGGCCCTTGTGTCGGCCTTAAACCCCCAGGGGTATGGAGGTA
GTCAGAACCTTGCGGGGGGCTTTCGGTAGTTTTAAAATTCTCTTTTTTGCGTATTTAACA
TTCTCTGAGCGATGTTGATGACCAGGACTTGGAGCCTTGCTGGAAGAGAGAGGAGCTTTG
CCCGAGACTAGAGTCACATCCCGACAGTCCTTGTCCTGGTGTGCTACAGTCCTCGGAGAG
AATCTGCTGGTCTCGATTCACTGGCGAGGGCAGTCAGTGCCCCCGGGAGTGCCCAGATCA
GAAACATGCCCTTGGCGCTTCCTGGATGGAGTGGGTTAGCAGGCGTCTTTCTTCGTACCC
ATCACAGAGTTGGTGACTGTCATGGTGCGTCATAAACCCTTTTCTCTGTTCTTCCAGGGT
TACTACAAAGTTCTGGGGAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAA
TTTTTCAGCAGACGAGCTGAAGAGAAGATTAAGGGTGTCGGGGGGGCCTGTGTCCTGGTA
GCTTGAAACCACATGGTGGGAAACTCATTAAATGTTGACAAGTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               877-996, + strand, RNAz p=0.73077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               877-996, + strand, RNAz p=0.73077

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               838-996, gnl|bosTau2|chr17 (18570703-18570861)
               

               
               838-996, gnl|Hg17|chr6 (153695664-153695506)
               

               
               838-996, gnl|Mm7|chr3 (24147713-24147869)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               838-996, gnl|bosTau2|chr17 (18570703-18570861)
               

               
               838-996, gnl|Hg17|chr6 (153695664-153695506)
               

               
               838-996, gnl|Mm7|chr3 (24147713-24147869)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)

	838-996, gnl\|bosTau2\|chr17 (18570703-18570861)
	838-996, gnl\|Hg17\|chr6 (153695664-153695506)
	838-996, gnl\|Mm7\|chr3 (24147713-24147869)