Ss1.1-rsme040_j7.5
|
CCGTGCTACGGCCCGGCGGCTTCCAGGCGCACTACCGCGATGAGGACGGGGACTTGGTTG
CCTTTTCCAGTGACGAGGAACTGACGATGGCGATGTCGTATGTGAAGGATGACATCTTCC
GTATTTACATTAAAGAGAAGAAGGAGTGCCGGCGGGACCACCGCCCCCCGTGCGCGCAGG
AGGTGCCCCGCAACATGGTGCACCCCAATGTGATCTGTGATGGTTGCAACGGGCCGGTGG
TGGGGACCCGCTACAAGTGCAGCGTCTGCCCGGACTACGACCTGTGCGCTGCCTGCGAGG
GGAAGGGCATTCACAAGGAGCACAGCAAGCTCGCCTTCCCCAGCCCCTTTGGGCACCTTT
CTGAGGGCTTCTCTCACAGCCGCTGGCTCCGGAAGCTGAGACATGGGCACTTCGGGTGGC
CTGGCTGGGAGATGGGCCCGCCGGGGAACTGGAGCCCACGTCCTCCTCGAGCGGGGGATG
CTCGCCCTGGCCCTGCTGAGGAATCAGCTTCTGGTCCATCAGAGGATCCCAATGTGAATT
TCCTCAAGAACGTAGGGGAGAGTGTGGCAGCTGCCCTCAGCCCTCTGGGCATCGAAGTCG
ATATTGACGTGGAACATGGAGGGAAGAGAAGCCGCCTGACACCCACCTCCCCAGGCAGCT
CCAGCACAGAGGACAAGTGCAGCTCTCAGCCGAGCAGCTGCTCTTCCGACCCTAGCAAGC
CGGACGGGGAGGTGGAGGGCACGGCCCAGTGTCTGGTGGAGCAAATGAATAAGATCGCCC
TGGAGTCGGGGGTGCAGCCTGAGGAACAGATGGAGTCTGACAACTGTTCAGGAGGAGACG
ATGACTGGACCCATTTATCTTCCAAAGAGGTGGACCCGTCTACAGGTGAACTCCAGTCTC
TACAGATGCCTGAATCTGAAGGGCCAAGCTCTCTGAACCCTTCCCAGGAAGGACCCACAG
GGCTGAAGGAAGCGGCATTGTACCCACATCTGCCACCAGAAGCTGACCCCCGGCTGATCG
AGTCCCTCTCCCAGATGCTGTCCATGGGGTTCTCTGATGAAGGTGGCTGGCTGACCAGGC
TCCTACAGACCAAGAATTATGACATCGGGGCTGCCCTGGACACCATCCAGTATTCGAAAC
ACCCACCGCCCTTGTGACAGTGTTTGCTCACCTCTTCTGTGTCCCCTTTCCTGTCTCATA
GTTGTGTTGAACTAGTGTAGAACCCCCGTGCCTCTGTAAGGGCCCATTTCTCTGCATTCT
TCTTCCAGAATCTGGGGGGTGGGGACGCACAAAGCCATCGGGGCAGTAGAGCAAGTGACA
CGAGGGTGGAGTTCTACGTGTGTGGGAGCTGATAGCTGAGAAACGTTTGGGCGCCTGGCC
CCTTGCAGCCAGCACCCCCAGCAGAGCCGAGACTGGGGAGGATGTGGAGGCCACACCGTG
TCAATGTTCCCGCTGTCCCCCACAGGGTTACACCAGCAGTCCAGAACAGATCTTGCCTAA
TGGCCTTCTGCTGTTTCTTTTCCTTTTTTTTTTCTTTTTAAAATGACTAATAGTACACTA
ATATGTAGTTGATTTTCTGCTAGAAACGGATGTACTCTGAATGGAGCTAGAGTATAGCCA
GCATTGTGTCGGGGCGGAGGTGGCTGTCCTGTGGTGAGTACCAGAGGGCAGGACAGCTCT
GGGACTTTGGCTGCACATCTGGGACTAGAGAAGGGCTGGAAGGGGAACTGACCTTGGTGT
TCACTGAGTACTGCCTGTTTCATAACCACTGTAGTTCTCTCATTTCCCAGTGCTGTCAGC
TGCTTTTAAAGTAAGAAAATCACTTTGTAGCCATTCTGTTACCACATTTGTAAACAATCT
GTAATTAAATGGTATAAGCACTTTAATCAAAAAATGAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGTGCTACGGCCCGGCGGCTTCCAGGCGCACTACCGCGATGAGGACGGGGACTTGGTTG
CCTTTTCCAGTGACGAGGAACTGACGATGGCGATGTCGTATGTGAAGGATGACATCTTCC
GTATTTACATTAAAGAGAAGAAGGAGTGCCGGCGGGACCACCGCCCCCCGTGCGCGCAGG
AGGTGCCCCGCAACATGGTGCACCCCAATGTGATCTGTGATGGTTGCAACGGGCCGGTGG
TGGGGACCCGCTACAAGTGCAGCGTCTGCCCGGACTACGACCTGTGCGCTGCCTGCGAGG
GGAAGGGCATTCACAAGGAGCACAGCAAGCTCGCCTTCCCCAGCCCCTTTGGGCACCTTT
CTGAGGGCTTCTCTCACAGCCGCTGGCTCCGGAAGCTGAGACATGGGCACTTCGGGTGGC
CTGGCTGGGAGATGGGCCCGCCGGGGAACTGGAGCCCACGTCCTCCTCGAGCGGGGGATG
CTCGCCCTGGCCCTGCTGAGGAATCAGCTTCTGGTCCATCAGAGGATCCCAATGTGAATT
TCCTCAAGAACGTAGGGGAGAGTGTGGCAGCTGCCCTCAGCCCTCTGGGCATCGAAGTCG
ATATTGACGTGGAACATGGAGGGAAGAGAAGCCGCCTGACACCCACCTCCCCAGGCAGCT
CCAGCACAGAGGACAAGTGCAGCTCTCAGCCGAGCAGCTGCTCTTCCGACCCTAGCAAGC
CGGACGGGGAGGTGGAGGGCACGGCCCAGTGTCTGGTGGAGCAAATGAATAAGATCGCCC
TGGAGTCGGGGGTGCAGCCTGAGGAACAGATGGAGTCTGACAACTGTTCAGGAGGAGACG
ATGACTGGACCCATTTATCTTCCAAAGAGGTGGACCCGTCTACAGGTGAACTCCAGTCTC
TACAGATGCCTGAATCTGAAGGGCCAAGCTCTCTGAACCCTTCCCAGGAAGGACCCACAG
GGCTGAAGGAAGCGGCATTGTACCCACATCTGCCACCAGAAGCTGACCCCCGGCTGATCG
AGTCCCTCTCCCAGATGCTGTCCATGGGGTTCTCTGATGAAGGTGGCTGGCTGACCAGGC
TCCTACAGACCAAGAATTATGACATCGGGGCTGCCCTGGACACCATCCAGTATTCGAAAC
ACCCACCGCCCTTGTGACAGTGTTTGCTCACCTCTTCTGTGTCCCCTTTCCTGTCTCATA
GTTGTGTTGAACTAGTGTAGAACCCCCGTGCCTCTGTAAGGGCCCATTTCTCTGCATTCT
TCTTCCAGAATCTGGGGGGTGGGGACGCACAAAGCCATCGGGGCAGTAGAGCAAGTGACA
CGAGGGTGGAGTTCTACGTGTGTGGGAGCTGATAGCTGAGAAACGTTTGGGCGCCTGGCC
CCTTGCAGCCAGCACCCCCAGCAGAGCCGAGACTGGGGAGGATGTGGAGGCCACACCGTG
TCAATGTTCCCGCTGTCCCCCACAGGGTTACACCAGCAGTCCAGAACAGATCTTGCCTAA
TGGCCTTCTGCTGTTTCTTTTCCTTTTTTTTTTCTTTTTAAAATGACTAATAGTACACTA
ATATGTAGTTGATTTTCTGCTAGAAACGGATGTACTCTGAATGGAGCTAGAGTATAGCCA
GCATTGTGTCGGGGCGGAGGTGGCTGTCCTGTGGTGAGTACCAGAGGGCAGGACAGCTCT
GGGACTTTGGCTGCACATCTGGGACTAGAGAAGGGCTGGAAGGGGAACTGACCTTGGTGT
TCACTGAGTACTGCCTGTTTCATAACCACTGTAGTTCTCTCATTTCCCAGTGCTGTCAGC
TGCTTTTAAAGTAAGAAAATCACTTTGTAGCCATTCTGTTACCACATTTGTAAACAATCT
GTAATTAAATGGTATAAGCACTTTAATCAAAAAATGAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
134-366, gnl|bosTau2|chr7 (577151-577383) |
|
134-366, gnl|canFam2|chr11 (4870951-4870739) |
|
134-366, gnl|danRer3|chr19 (62689211-62689411) |
|
134-366, gnl|dasNov1|scaffold_229839 (3252-3464) |
|
134-366, gnl|echTel1|scaffold_287741 (299-509) |
|
134-366, gnl|fr1|chrUn (302479384-302479124) |
|
134-366, gnl|galGal2|chr13 (12405062-12404850) |
|
134-366, gnl|hg17|chr5 (179183463-179183675) |
|
134-366, gnl|Hg17|chr5 (179183462-179183694) |
|
134-366, gnl|mm7|chr11 (50164396-50164184) |
|
134-366, gnl|Mm7|chr11 (50164395-50164163) |
|
134-366, gnl|monDom2|scaffold_6 (14942138-14942350) |
|
134-366, gnl|oryCun1|scaffold_142210 (3396-3608) |
|
134-366, gnl|panTro1|chr4 (186705848-186706060) |
|
134-366, gnl|rheMac2|chr6 (176515799-176516011) |
|
134-366, gnl|rn3|chr10 (35761154-35760945) |
|
134-366, gnl|tetNig1|chrUn_random (47573412-47573232) |
|
134-366, gnl|xenTro1|scaffold_261 (829697-829485) |
| |
|
574-804, gnl|bosTau2|chr7 (583633-583863) |
|
574-804, gnl|Hg17|chr5 (179192623-179192853) |
|
574-804, gnl|Mm7|chr11 (50159801-50159570) |
| |
|
997-1891, gnl|bosTau2|chr7 (585381-586255) |
|
997-1891, gnl|Hg17|chr5 (179196039-179196861) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
134-366, gnl|bosTau2|chr7 (577151-577383) |
|
134-366, gnl|canFam2|chr11 (4870951-4870739) |
|
134-366, gnl|danRer3|chr19 (62689211-62689411) |
|
134-366, gnl|dasNov1|scaffold_229839 (3252-3464) |
|
134-366, gnl|echTel1|scaffold_287741 (299-509) |
|
134-366, gnl|fr1|chrUn (302479384-302479124) |
|
134-366, gnl|galGal2|chr13 (12405062-12404850) |
|
134-366, gnl|hg17|chr5 (179183463-179183675) |
|
134-366, gnl|Hg17|chr5 (179183462-179183694) |
|
134-366, gnl|mm7|chr11 (50164396-50164184) |
|
134-366, gnl|Mm7|chr11 (50164395-50164163) |
|
134-366, gnl|monDom2|scaffold_6 (14942138-14942350) |
|
134-366, gnl|oryCun1|scaffold_142210 (3396-3608) |
|
134-366, gnl|panTro1|chr4 (186705848-186706060) |
|
134-366, gnl|rheMac2|chr6 (176515799-176516011) |
|
134-366, gnl|rn3|chr10 (35761154-35760945) |
|
134-366, gnl|tetNig1|chrUn_random (47573412-47573232) |
|
134-366, gnl|xenTro1|scaffold_261 (829697-829485) |
| |
|
574-804, gnl|bosTau2|chr7 (583633-583863) |
|
574-804, gnl|Hg17|chr5 (179192623-179192853) |
|
574-804, gnl|Mm7|chr11 (50159801-50159570) |
| |
|
997-1891, gnl|bosTau2|chr7 (585381-586255) |
|
997-1891, gnl|Hg17|chr5 (179196039-179196861) |
|
cov (1.98229) |
|
sme (1.52718) |
|
sto (1.25877) |
|
cmu (1.11836) |
|
ssp (1.08416) |
|
spc (1.02029) |
|
bla (0.994777) |
|
cje (0.991408) |
|
aor (0.976372) |
|
gul (0.887942) |
|
che (0.817884) |
|
rec (0.692281) |
|
fhi (0.678311) |
|
ste (0.676041) |
|
cki (0.660939) |
|
nms (0.641574) |
|
hea (0.613497) |
|
pgl (0.592417) |
|
spl (0.572738) |
|
csk (0.562984) |
|
pro (0.512033) |
|
mga (0.480615) |
|
cbe (0.478469) |
|
bfe (0.449573) |
|
cst (0.420109) |
|
cty (0.41632) |
|
tes (0.415628) |
|
ldo (0.38801) |
|
ova (0.387397) |
|
sag (0.36543) |
|
ton (0.351) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
cut (0.339847) |
|
cag (0.302389) |
|
isp (0.300752) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
nca (0.273748) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
thg (0.253582) |
|
cly (0.241284) |
|
jca (0.22792) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
eli (0.151814) |
|
fat (0.147427) |
|
nmm (0.132802) |
|
clu (0.119646) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
cov (1.98229) |
|
sme (1.52718) |
|
sto (1.25877) |
|
cmu (1.11836) |
|
ssp (1.08416) |
|
spc (1.02029) |
|
bla (0.994777) |
|
cje (0.991408) |
|
aor (0.976372) |
|
gul (0.887942) |
|
che (0.817884) |
|
rec (0.692281) |
|
fhi (0.678311) |
|
ste (0.676041) |
|
cki (0.660939) |
|
nms (0.641574) |
|
hea (0.613497) |
|
pgl (0.592417) |
|
spl (0.572738) |
|
csk (0.562984) |
|
pro (0.512033) |
|
mga (0.480615) |
|
cbe (0.478469) |
|
bfe (0.449573) |
|
cst (0.420109) |
|
cty (0.41632) |
|
tes (0.415628) |
|
ldo (0.38801) |
|
ova (0.387397) |
|
sag (0.36543) |
|
ton (0.351) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
cut (0.339847) |
|
cag (0.302389) |
|
isp (0.300752) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
nca (0.273748) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
thg (0.253582) |
|
cly (0.241284) |
|
jca (0.22792) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
eli (0.151814) |
|
fat (0.147427) |
|
nmm (0.132802) |
|
clu (0.119646) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
