Non-Coding RNA Search

Ss1.1-rsme21_a12.5

Sequence:


               
               GTCAAAATAGTGAAAAGAGCCTCCATCCTGGGAGGAACTTGTTGTGTTCTTAAGGTGAAT
AGGAAAAATATGATCTTACAATTTTTTTTGATGGGGAAAATTAAGTTTACATTTTTCATA
TTTAGTGTTAAACAATTTTATGTAGATTAAAATGAAAGAACAGTATTGGGGGAAAAAACA
AGTGCCTAAATGTCTTAATGCTCTCTACATAAGGCAGTTAGAAATAGAAGTGACCATTAG
TAATACAACTATTTTTGTCAAATTTAGTTGGGGGGGTGGTTGTTGTTTGTTTCCTTGGGT
TTTTTTCTATGGCAAACTTTTAAAATGTACCAATGTGAAAAAACACTTTCCTGAATGCCA
TTACTTCTCATGCCCTCAAAGCTTTCATATTTGTAGCCTACTCCTGTTAAAGGTTTCTCC
TGTTCCTAGTTTCTAGCTTGCAAAAATACGTAACAAATCTGGCAACCTGGTATTTGTTAC
TAAACAGCATGTGTTTTCAGGTTTCTTTTCTATTGTACCTAAACCAGTCTAAATTAAAAC
TTAGTAGAACACCAGAAGTACTGATTCTGTTTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAAAATAGTGAAAAGAGCCTCCATCCTGGGAGGAACTTGTTGTGTTCTTAAGGTGAAT
AGGAAAAATATGATCTTACAATTTTTTTTGATGGGGAAAATTAAGTTTACATTTTTCATA
TTTAGTGTTAAACAATTTTATGTAGATTAAAATGAAAGAACAGTATTGGGGGAAAAAACA
AGTGCCTAAATGTCTTAATGCTCTCTACATAAGGCAGTTAGAAATAGAAGTGACCATTAG
TAATACAACTATTTTTGTCAAATTTAGTTGGGGGGGTGGTTGTTGTTTGTTTCCTTGGGT
TTTTTTCTATGGCAAACTTTTAAAATGTACCAATGTGAAAAAACACTTTCCTGAATGCCA
TTACTTCTCATGCCCTCAAAGCTTTCATATTTGTAGCCTACTCCTGTTAAAGGTTTCTCC
TGTTCCTAGTTTCTAGCTTGCAAAAATACGTAACAAATCTGGCAACCTGGTATTTGTTAC
TAAACAGCATGTGTTTTCAGGTTTCTTTTCTATTGTACCTAAACCAGTCTAAATTAAAAC
TTAGTAGAACACCAGAAGTACTGATTCTGTTTCTGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-575, gnl|bosTau2|chr10 (49601623-49602202)
               

               
               1-575, gnl|Hg17|chr14 (60182299-60181721)
               

               
               1-575, gnl|Mm7|chr12 (70993630-70993039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-575, gnl|bosTau2|chr10 (49601623-49602202)
               

               
               1-575, gnl|Hg17|chr14 (60182299-60181721)
               

               
               1-575, gnl|Mm7|chr12 (70993630-70993039)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sme (0.305437)
               

               
               isp (0.300752)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	1-575, gnl\|bosTau2\|chr10 (49601623-49602202)
	1-575, gnl\|Hg17\|chr14 (60182299-60181721)
	1-575, gnl\|Mm7\|chr12 (70993630-70993039)

	sme (0.305437)
	isp (0.300752)
	sag (0.182715)
	rec (0.17307)
	eye (0.170503)
	tbr (0.154178)
	ssp (0.13552)
	lyg (0.133103)
	med (0.116252)
	ldo (0.0970026)