Non-Coding RNA Search

Ss1.1-rsme21_c2.5

Sequence:


               
               AGGCAACGATATGTTTCTGTAGAGAATCAACACTGTGAACACTGTAATTCTTGCACATCC
AAGGATGGCAGAAAATGGAACCATTGCTTTCTCTGCAAAAAGTGTGTAAAGCCTTCCTGG
ATCCACTGTAATACTTGCAGTCACTGCGCTCTTCCAGATCATTCTTGCCAGGGCCCTAAA
GACGGCTGCTTTATTTGTGGTGAATTAGATCATAAACGCAGTACTTGTCCCAACATCTCT
ACAACGAAGAAAGTTAACACGTTAGTTGAATTCTTTTACTTGCTAGAAAAAAAATTTCCT
TGTGTATTTGTACTGAGCAATCCGCGGAAGTATTCAATAGTCAGAGGTTCTGAAAGTGCT
AAAGTAAATGAATTGTTGCTTTCACTGTTAGGTATGGTTTTCCTAGATAGGGGGAGGGAA
ATAAGTCAAAAGAGCTTACAATTTTACAGGTGAGACATGAAAATAATCAAAATAAAAGGA
TGAAAGTATCTAACCTCCTATATAATTTATATAGGAAGCCAGGTTATACCAATGACAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAACGATATGTTTCTGTAGAGAATCAACACTGTGAACACTGTAATTCTTGCACATCC
AAGGATGGCAGAAAATGGAACCATTGCTTTCTCTGCAAAAAGTGTGTAAAGCCTTCCTGG
ATCCACTGTAATACTTGCAGTCACTGCGCTCTTCCAGATCATTCTTGCCAGGGCCCTAAA
GACGGCTGCTTTATTTGTGGTGAATTAGATCATAAACGCAGTACTTGTCCCAACATCTCT
ACAACGAAGAAAGTTAACACGTTAGTTGAATTCTTTTACTTGCTAGAAAAAAAATTTCCT
TGTGTATTTGTACTGAGCAATCCGCGGAAGTATTCAATAGTCAGAGGTTCTGAAAGTGCT
AAAGTAAATGAATTGTTGCTTTCACTGTTAGGTATGGTTTTCCTAGATAGGGGGAGGGAA
ATAAGTCAAAAGAGCTTACAATTTTACAGGTGAGACATGAAAATAATCAAAATAAAAGGA
TGAAAGTATCTAACCTCCTATATAATTTATATAGGAAGCCAGGTTATACCAATGACAGTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               116-494, gnl|bosTau2|chr6 (21656280-21655908)
               

               
               116-494, gnl|Hg17|chr4 (25042913-25043307)
               

               
               116-494, gnl|Mm7|chr5 (52192428-52192752)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-494, gnl|bosTau2|chr6 (21656280-21655908)
               

               
               116-494, gnl|Hg17|chr4 (25042913-25043307)
               

               
               116-494, gnl|Mm7|chr5 (52192428-52192752)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               tra (0.123092)

	116-494, gnl\|bosTau2\|chr6 (21656280-21655908)
	116-494, gnl\|Hg17\|chr4 (25042913-25043307)
	116-494, gnl\|Mm7\|chr5 (52192428-52192752)