Non-Coding RNA Search

Ss1.1-rsme21_i13.5

Sequence:


               
               TGGCCTGGGGGGCAGCATGAGGGAAGACTCGGTTGCTTAGACACCCCGTCCTCCTTCATT
TCTTTCCTGTTTTAATTCTTGCCTAATTGGAAACTTGCTTCCAAGCCACACTGAAGACTA
GAAGAAAAACTGGCACACCACATTCATGCCAATGGTCTTCGTCACTTCTAGAGAGACCTG
TGAGTGGGATGGAAATGGCATTGAACTAGCAAAAGAAGTGGATTCTGTACTGGTTCTTCA
ATGGAGTAGCCACATGAACTCTTGGGCAGATCAGACTCTTGGGAACTGTGCAATGGAGGT
CCCTCCCAACTCTAAAAATCTCATTCTTTCCACTCCATGGACTGTCTGCATCCCATCCAG
ATGAGCTGTCATTCCTGAGACATCCCTGTAGTGCCCACCAGAACCAGTTGGTGAGCCAAG
ACCTTTGTCAAATGTACAACTGCTCAGAGCCTCAAGTTCCTAATTTGTAAAATGGGGAAA
GAATGCCTGTCTCAGCACATTGTTAGAGGATCAGATGCTCGCACATGTGTGTGTGCATAT
GTATGTGTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTGGGGGGCAGCATGAGGGAAGACTCGGTTGCTTAGACACCCCGTCCTCCTTCATT
TCTTTCCTGTTTTAATTCTTGCCTAATTGGAAACTTGCTTCCAAGCCACACTGAAGACTA
GAAGAAAAACTGGCACACCACATTCATGCCAATGGTCTTCGTCACTTCTAGAGAGACCTG
TGAGTGGGATGGAAATGGCATTGAACTAGCAAAAGAAGTGGATTCTGTACTGGTTCTTCA
ATGGAGTAGCCACATGAACTCTTGGGCAGATCAGACTCTTGGGAACTGTGCAATGGAGGT
CCCTCCCAACTCTAAAAATCTCATTCTTTCCACTCCATGGACTGTCTGCATCCCATCCAG
ATGAGCTGTCATTCCTGAGACATCCCTGTAGTGCCCACCAGAACCAGTTGGTGAGCCAAG
ACCTTTGTCAAATGTACAACTGCTCAGAGCCTCAAGTTCCTAATTTGTAAAATGGGGAAA
GAATGCCTGTCTCAGCACATTGTTAGAGGATCAGATGCTCGCACATGTGTGTGTGCATAT
GTATGTGTGTGG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               170-332, gnl|bosTau2|chr10 (55346774-55346610)
               

               
               170-332, gnl|Hg17|chr14 (68584232-68584075)
               

               
               170-332, gnl|Mm7|chr12 (78296331-78296185)
               


               
               334-547, gnl|bosTau2|chr10 (55346103-55345897)
               

               
               334-547, gnl|Hg17|chr14 (68584041-68583839)
               

               
               334-547, gnl|Mm7|chr12 (78296161-78295977)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-332, gnl|bosTau2|chr10 (55346774-55346610)
               

               
               170-332, gnl|Hg17|chr14 (68584232-68584075)
               

               
               170-332, gnl|Mm7|chr12 (78296331-78296185)
               


               
               334-547, gnl|bosTau2|chr10 (55346103-55345897)
               

               
               334-547, gnl|Hg17|chr14 (68584041-68583839)
               

               
               334-547, gnl|Mm7|chr12 (78296161-78295977)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cty (0.10408)

	170-332, gnl\|bosTau2\|chr10 (55346774-55346610)
	170-332, gnl\|Hg17\|chr14 (68584232-68584075)
	170-332, gnl\|Mm7\|chr12 (78296331-78296185)

	334-547, gnl\|bosTau2\|chr10 (55346103-55345897)
	334-547, gnl\|Hg17\|chr14 (68584041-68583839)
	334-547, gnl\|Mm7\|chr12 (78296161-78295977)