Non-Coding RNA Search

Ss1.1-rsme21_o16.5.5

Sequence:


               
               GTGAAGACGCGGAGAAGAAAGTTCTCGCCACCAAAGTCCTTGGCACTGTCAAATGGTTCA
ACGTCAGAAATGGATATGGATTTATAAATCGAAATGACACCAAAGAAGATGTGTTTGTAC
ATCAGACTGCCATCAAGAAGAATAACCCACGGAAGTATCTGCGCAGTGTAGGAGATGGAG
AAACTGTAGAGTTTGATGTGGTTGAAGGAGAGAAGGGTGCAGAAGCAGCCAACGTGACCG
GCCCGGATGGTGTCCCGGTGGAGGGGAGCCGCTATGCTGCCGATCGGCGCCGTTACCGAC
GCGGCTACTACGGCCGGCGCCGAGGGCCTCCTCGCAATGCTGGTGAGATTGGAGAAATGA
AGGATGGAGTCCCAGAGGGAACACAGCTTCAGGGACCAGTTCATCGAAATCCGACTTACC
GCCCAAGGTACCGTAGTAGGGGCCCTCCTCGCCCACGACCTGCCCCGGCTGTTGGAGAGG
CTGAAGATAAAGAGAATCAACAAGCGGCCAATGGTCCAAACCAGCCACCTGCTCGCCGTG
GGTACCGGCGCCCCTATAACTATCGGCGGCGCCCCCGTCCTCCTAATGCTCCTTCACAAG
ATGGCAAAGAGACCAAAGCAGGCGAAGCACCATCTGACAACCCTGCTCCGGCCACCGAGC
AGAGCAGTGCTGAGTAACACGCGGCTCCCCAGGCACCTTCACCATCAGCAGGTGACCTAA
AGAACTAATGACCATTCAAAAAAATAAAACAAAGCAAAAAGCAGACCGTGACCTTACCAA
CACAACACCAAAGAAACGTCCAAGCAATAAAGTGGAAGAACAATAACCAAGATGTGGACA
TTAGAATGTTTACTATTATTCTTTACAAAACAAACAACTACACGAGGAAAATGTCAGCCA
GTTTTTCCAGCAATCTGAGATCCTGGGAACGCCTGCACAGAACAAGAGAGCACCCTCCCC
AGTTTCAGCAACTACTAGGTTTATATTTTTTTTTCCTGGTTTTTACTGTTTTGGTAATAT
GAATTGAAAGAAGAAAACCAAAGAAATCTTGAAATATATAGTAAATGCTTTTTTTCCTTT
TTTGTTCATTTTGGATGCTGGTGCTAAACTTCCAAGTGTCATGATTTAAAAAGAAATTTT
ATGCCCTTATTTATTTCTAGGATGAGGGGAGGATGACATTTTGCTTTCTTAAGTGACTCT
CTTTGAAAATGTGCCGTATGAAGTTCCTCAAAAATAAAATTTTTACCCTTGAAAGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGACGCGGAGAAGAAAGTTCTCGCCACCAAAGTCCTTGGCACTGTCAAATGGTTCA
ACGTCAGAAATGGATATGGATTTATAAATCGAAATGACACCAAAGAAGATGTGTTTGTAC
ATCAGACTGCCATCAAGAAGAATAACCCACGGAAGTATCTGCGCAGTGTAGGAGATGGAG
AAACTGTAGAGTTTGATGTGGTTGAAGGAGAGAAGGGTGCAGAAGCAGCCAACGTGACCG
GCCCGGATGGTGTCCCGGTGGAGGGGAGCCGCTATGCTGCCGATCGGCGCCGTTACCGAC
GCGGCTACTACGGCCGGCGCCGAGGGCCTCCTCGCAATGCTGGTGAGATTGGAGAAATGA
AGGATGGAGTCCCAGAGGGAACACAGCTTCAGGGACCAGTTCATCGAAATCCGACTTACC
GCCCAAGGTACCGTAGTAGGGGCCCTCCTCGCCCACGACCTGCCCCGGCTGTTGGAGAGG
CTGAAGATAAAGAGAATCAACAAGCGGCCAATGGTCCAAACCAGCCACCTGCTCGCCGTG
GGTACCGGCGCCCCTATAACTATCGGCGGCGCCCCCGTCCTCCTAATGCTCCTTCACAAG
ATGGCAAAGAGACCAAAGCAGGCGAAGCACCATCTGACAACCCTGCTCCGGCCACCGAGC
AGAGCAGTGCTGAGTAACACGCGGCTCCCCAGGCACCTTCACCATCAGCAGGTGACCTAA
AGAACTAATGACCATTCAAAAAAATAAAACAAAGCAAAAAGCAGACCGTGACCTTACCAA
CACAACACCAAAGAAACGTCCAAGCAATAAAGTGGAAGAACAATAACCAAGATGTGGACA
TTAGAATGTTTACTATTATTCTTTACAAAACAAACAACTACACGAGGAAAATGTCAGCCA
GTTTTTCCAGCAATCTGAGATCCTGGGAACGCCTGCACAGAACAAGAGAGCACCCTCCCC
AGTTTCAGCAACTACTAGGTTTATATTTTTTTTTCCTGGTTTTTACTGTTTTGGTAATAT
GAATTGAAAGAAGAAAACCAAAGAAATCTTGAAATATATAGTAAATGCTTTTTTTCCTTT
TTTGTTCATTTTGGATGCTGGTGCTAAACTTCCAAGTGTCATGATTTAAAAAGAAATTTT
ATGCCCTTATTTATTTCTAGGATGAGGGGAGGATGACATTTTGCTTTCTTAAGTGACTCT
CTTTGAAAATGTGCCGTATGAAGTTCCTCAAAAATAAAATTTTTACCCTTGAAAGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16198465|gb|AAH15913.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16198465|gb|AAH15913.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               8-302, gnl|bosTau2|chr7 (64921558-64921850)
               

               
               8-302, gnl|Hg17|chr9 (35962168-35961874)
               

               
               8-302, gnl|Mm7|chr11 (100041318-100041612)
               


               
               40-263, gnl|bosTau2|chr18 (23762455-23762225)
               

               
               40-263, gnl|Hg17|chr9 (35962137-35961913)
               

               
               40-263, gnl|Mm7|chr11 (100041349-100041573)
               


               
               662-1036, gnl|bosTau2|chr24 (32065382-32065746)
               

               
               662-1036, gnl|Hg17|chr16 (31487221-31486865)
               

               
               662-1036, gnl|Mm7|chr6 (131438700-131438392)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-302, gnl|bosTau2|chr7 (64921558-64921850)
               

               
               8-302, gnl|Hg17|chr9 (35962168-35961874)
               

               
               8-302, gnl|Mm7|chr11 (100041318-100041612)
               


               
               40-263, gnl|bosTau2|chr18 (23762455-23762225)
               

               
               40-263, gnl|Hg17|chr9 (35962137-35961913)
               

               
               40-263, gnl|Mm7|chr11 (100041349-100041573)
               


               
               662-1036, gnl|bosTau2|chr24 (32065382-32065746)
               

               
               662-1036, gnl|Hg17|chr16 (31487221-31486865)
               

               
               662-1036, gnl|Mm7|chr6 (131438700-131438392)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

Help | Less info


               
               ste (10.2758)
               

               
               ldo (9.89427)
               

               
               isp (8.87218)
               

               
               sme (7.94136)
               

               
               vin (6.65115)
               

               
               bfe (4.79544)
               

               
               tbr (4.77953)
               

               
               ssp (4.06559)
               

               
               tes (2.49377)
               

               
               mas (2.10305)
               

               
               csk (1.68895)
               

               
               ton (1.5795)
               

               
               cte (1.4637)
               

               
               hea (1.43149)
               

               
               che (1.22683)
               

               
               ski (1.02715)
               

               
               fat (0.737137)
               

               
               hlv (0.696282)
               

               
               sag (0.548145)
               

               
               pla (0.534688)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               nbm (0.496623)
               

               
               cki (0.495704)
               

               
               ctl (0.459207)
               

               
               nms (0.427716)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (10.2758)
               

               
               ldo (9.89427)
               

               
               isp (8.87218)
               

               
               sme (7.94136)
               

               
               vin (6.65115)
               

               
               bfe (4.79544)
               

               
               tbr (4.77953)
               

               
               ssp (4.06559)
               

               
               tes (2.49377)
               

               
               mas (2.10305)
               

               
               csk (1.68895)
               

               
               ton (1.5795)
               

               
               cte (1.4637)
               

               
               hea (1.43149)
               

               
               che (1.22683)
               

               
               ski (1.02715)
               

               
               fat (0.737137)
               

               
               hlv (0.696282)
               

               
               sag (0.548145)
               

               
               pla (0.534688)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               nbm (0.496623)
               

               
               cki (0.495704)
               

               
               ctl (0.459207)
               

               
               nms (0.427716)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	8-302, gnl\|bosTau2\|chr7 (64921558-64921850)
	8-302, gnl\|Hg17\|chr9 (35962168-35961874)
	8-302, gnl\|Mm7\|chr11 (100041318-100041612)

	40-263, gnl\|bosTau2\|chr18 (23762455-23762225)
	40-263, gnl\|Hg17\|chr9 (35962137-35961913)
	40-263, gnl\|Mm7\|chr11 (100041349-100041573)

	662-1036, gnl\|bosTau2\|chr24 (32065382-32065746)
	662-1036, gnl\|Hg17\|chr16 (31487221-31486865)
	662-1036, gnl\|Mm7\|chr6 (131438700-131438392)

	ste (10.2758)
	ldo (9.89427)
	isp (8.87218)
	sme (7.94136)
	vin (6.65115)
	bfe (4.79544)
	tbr (4.77953)
	ssp (4.06559)
	tes (2.49377)
	mas (2.10305)
	csk (1.68895)
	ton (1.5795)
	cte (1.4637)
	hea (1.43149)
	che (1.22683)
	ski (1.02715)
	fat (0.737137)
	hlv (0.696282)
	sag (0.548145)
	pla (0.534688)
	pro (0.512033)
	bla (0.497389)
	nbm (0.496623)
	cki (0.495704)
	ctl (0.459207)
	nms (0.427716)
	nca (0.410621)
	lyg (0.399308)
	ova (0.387397)
	sug (0.381874)
	sto (0.359648)
	rec (0.346141)
	jca (0.34188)
	eye (0.341006)
	mga (0.32041)
	lun (0.300978)
	liv (0.292569)
	lnt (0.284616)
	nmm (0.265604)
	kid (0.259471)
	ret (0.257467)
	mgp (0.230681)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	sin (0.174948)
	fhi (0.169578)
	nje (0.16592)
	cag (0.151194)
	lin (0.145603)
	pty (0.142714)
	cov (0.132153)
	tra (0.123092)
	cly (0.120642)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)