Non-Coding RNA Search

Ss1.1-rsme36_f10.5

Sequence:


               
               GCAGAGAGACAGACTGGGGAAGTCTGAGGACCAGGCTGACAGTGAACTGCCTGAAACCCC
CCAGTGCCTGTTTCTCTACCCATCATCACCCAAGGCCAGAGGACACATAGAACTTCACTC
CTTCTAGAGGGCCTCCCACCCCTTTGGCAGGGGCCTATCCTGCTATAGAAACATATCCTC
CAAGAAGTTTGCATGCACCCTTTTCCGGAGAAGCAGGGGAGTTTACCATCGATTGCCAGA
ATGGAAGAAGGGGGCCTCTTGGGAGTGTGCTGAGGTTATCAACTCTAATTGAACGTCCAC
TCGTGTGAGAGCAGAGTCTCCTCGTTGGTTTTCCAATGGGAGGAGAATAGGAAATATAAG
TTGAGCTGGAAAAATGTGTCCCAAACACCCCCATGTTGCAAGGTGCCTTGTAGGATTCAG
CTTTGCATGCCTTCTGATGCCCTTGGGCAGCAGGCAGGCAGAGATCCTGGGGAAGATGCT
CTGTGGACCTGCATGATGTCCAGGATCTCACAGAAGGCGGATCCATCCCGGAACGGAGCC
GTCTGTCAACTGCGTTGTTAAGGACACTTCCTGATGTGTGAGTGTGCTCTGGGTGGTTTT
GTACTACACACAACAGAAATTGTTTGGCTTTGTAATGGACCGGGTATATATGATAAATTA
CATATTTTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGAGACAGACTGGGGAAGTCTGAGGACCAGGCTGACAGTGAACTGCCTGAAACCCC
CCAGTGCCTGTTTCTCTACCCATCATCACCCAAGGCCAGAGGACACATAGAACTTCACTC
CTTCTAGAGGGCCTCCCACCCCTTTGGCAGGGGCCTATCCTGCTATAGAAACATATCCTC
CAAGAAGTTTGCATGCACCCTTTTCCGGAGAAGCAGGGGAGTTTACCATCGATTGCCAGA
ATGGAAGAAGGGGGCCTCTTGGGAGTGTGCTGAGGTTATCAACTCTAATTGAACGTCCAC
TCGTGTGAGAGCAGAGTCTCCTCGTTGGTTTTCCAATGGGAGGAGAATAGGAAATATAAG
TTGAGCTGGAAAAATGTGTCCCAAACACCCCCATGTTGCAAGGTGCCTTGTAGGATTCAG
CTTTGCATGCCTTCTGATGCCCTTGGGCAGCAGGCAGGCAGAGATCCTGGGGAAGATGCT
CTGTGGACCTGCATGATGTCCAGGATCTCACAGAAGGCGGATCCATCCCGGAACGGAGCC
GTCTGTCAACTGCGTTGTTAAGGACACTTCCTGATGTGTGAGTGTGCTCTGGGTGGTTTT
GTACTACACACAACAGAAATTGTTTGGCTTTGTAATGGACCGGGTATATATGATAAATTA
CATATTTTGAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-155, - strand, RNAz p=0.942407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-155, - strand, RNAz p=0.942407

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-392, gnl|bosTau2|chr28 (29139164-29139556)
               

               
               1-392, gnl|canFam2|chr28 (3931495-3931742)
               

               
               1-392, gnl|dasNov1|scaffold_5983 (52515-52240)
               

               
               1-392, gnl|echTel1|scaffold_301894 (18627-18380)
               

               
               1-392, gnl|hg17|chr10 (49896747-49897007)
               

               
               1-392, gnl|Hg17|chr10 (49897138-49896779)
               

               
               1-392, gnl|mm7|chr14 (30370104-30369883)
               

               
               1-392, gnl|Mm7|chr14 (30369744-30370068)
               

               
               1-392, gnl|oryCun1|scaffold_210617 (90210-90479)
               

               
               1-392, gnl|panTro1|chr8 (50228272-50228532)
               

               
               1-392, gnl|rheMac2|chr9 (47600327-47600067)
               

               
               1-392, gnl|rn3|chr16 (8462656-8462426)
               


               
               462-672, gnl|bosTau2|chr28 (29139665-29139863)
               

               
               462-672, gnl|Hg17|chr10 (49896709-49896499)
               

               
               462-672, gnl|Mm7|chr14 (30370153-30370353)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-392, gnl|bosTau2|chr28 (29139164-29139556)
               

               
               1-392, gnl|canFam2|chr28 (3931495-3931742)
               

               
               1-392, gnl|dasNov1|scaffold_5983 (52515-52240)
               

               
               1-392, gnl|echTel1|scaffold_301894 (18627-18380)
               

               
               1-392, gnl|hg17|chr10 (49896747-49897007)
               

               
               1-392, gnl|Hg17|chr10 (49897138-49896779)
               

               
               1-392, gnl|mm7|chr14 (30370104-30369883)
               

               
               1-392, gnl|Mm7|chr14 (30369744-30370068)
               

               
               1-392, gnl|oryCun1|scaffold_210617 (90210-90479)
               

               
               1-392, gnl|panTro1|chr8 (50228272-50228532)
               

               
               1-392, gnl|rheMac2|chr9 (47600327-47600067)
               

               
               1-392, gnl|rn3|chr16 (8462656-8462426)
               


               
               462-672, gnl|bosTau2|chr28 (29139665-29139863)
               

               
               462-672, gnl|Hg17|chr10 (49896709-49896499)
               

               
               462-672, gnl|Mm7|chr14 (30370153-30370353)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               cov (0.264306)
               

               
               ute (0.132784)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cov (0.264306)
               

               
               ute (0.132784)
               

               
               eep (0.122564)

	1-392, gnl\|bosTau2\|chr28 (29139164-29139556)
	1-392, gnl\|canFam2\|chr28 (3931495-3931742)
	1-392, gnl\|dasNov1\|scaffold_5983 (52515-52240)
	1-392, gnl\|echTel1\|scaffold_301894 (18627-18380)
	1-392, gnl\|hg17\|chr10 (49896747-49897007)
	1-392, gnl\|Hg17\|chr10 (49897138-49896779)
	1-392, gnl\|mm7\|chr14 (30370104-30369883)
	1-392, gnl\|Mm7\|chr14 (30369744-30370068)
	1-392, gnl\|oryCun1\|scaffold_210617 (90210-90479)
	1-392, gnl\|panTro1\|chr8 (50228272-50228532)
	1-392, gnl\|rheMac2\|chr9 (47600327-47600067)
	1-392, gnl\|rn3\|chr16 (8462656-8462426)

	462-672, gnl\|bosTau2\|chr28 (29139665-29139863)
	462-672, gnl\|Hg17\|chr10 (49896709-49896499)
	462-672, gnl\|Mm7\|chr14 (30370153-30370353)