Non-Coding RNA Search

Ss1.1-rsme36_p20.5

Sequence:


               
               GCCCCCTCAAGCCCTCCCACCCCAGGCAGCTGGTGGGAGCAGCTGACCCAGGCCTCCCGG
GTCTACGCCTCTGGTGGCACCGAGGGCTTCCCTCTTCCCCGGTGGGGATCCAGGCGTCAC
GGGACTGCAGCCGAGGTTGCACAGGAGAGGTCCCTGCCCACAGAGGAAGCAACACCAGGC
AGAGGCGTATGGCTGGGGAGACTCTTTGGAGTGCCTGGGGGCCTCGCAGAAACTGAGAGT
GGAGCCCCCAAATCCAGGAGACCATCCAGCTGGCTGCCCCCGACAGTGAGTATGTTGGCT
CTGATGAAGTGGGGGGCACCTCCCGAGACCCATTCTTCTCCAGAGGAGCTTAAGGCCTCA
GCACCCAGCATGGCGCAGACCCATAGGGCGGTCCGGGCTCTCTGTGACCACACTGCTGCG
GGACCTGACCAGCTGAGCTTCCGGCGTGGGGAAGTGCTGCGTGTCATCGCCACTGTGGAT
GAGGACTGGCTCCGCTGTGGAAGGGACGGAGTGGAGGGGCTAGTGCCTGTGGGGTACACA
TCCCTTGTTCTCTAGGCCCAGGACCTTTTCCTTTCCTGCAACTCTCTCCTTCCTGTCACC
TGGGAATGGAATGAACACTCACCCACGTAATCTGATCATCCCTGAAGCACTTTCCCCGTC
TGCAAAATGACACTTTCCTCCCACGTCCATTTCTGCCGTGTAAAATAAACTTTCCTTCTT
CCCTCCCATGCCCATTTATAATGTGAAATCTGCTCTTCTTCCAAATATATAAAAAGGAAT
TTCCCTCCATGCAATCTTTCCTCTTTCCAGTATGCATAAGGGAATCTCTCTCTTCCTATC
TGCAAAATGGAACTCTAACCTTCCTCTATCTTCTTCATCTGTAAGTAGACTATGCCAGTA
CCGTATATGCCTCAGTCCCAAGACCAGAAGGGCCTCTAGTCTTCTTCCTGCGTATGGAAA
CTTCCCCCACTTCACCCACCCCATGTTGCCTGTATTTATGATGTACTCATGCTATACTAG
GTGCTGAAGTTTGGACACCCCTGGTGGGTGGGCCTGTGGTGTTGGTCTGCCTCTTTCCTC
CTTTGTCCCAATAAAGAATGGGAGTTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCCTCAAGCCCTCCCACCCCAGGCAGCTGGTGGGAGCAGCTGACCCAGGCCTCCCGG
GTCTACGCCTCTGGTGGCACCGAGGGCTTCCCTCTTCCCCGGTGGGGATCCAGGCGTCAC
GGGACTGCAGCCGAGGTTGCACAGGAGAGGTCCCTGCCCACAGAGGAAGCAACACCAGGC
AGAGGCGTATGGCTGGGGAGACTCTTTGGAGTGCCTGGGGGCCTCGCAGAAACTGAGAGT
GGAGCCCCCAAATCCAGGAGACCATCCAGCTGGCTGCCCCCGACAGTGAGTATGTTGGCT
CTGATGAAGTGGGGGGCACCTCCCGAGACCCATTCTTCTCCAGAGGAGCTTAAGGCCTCA
GCACCCAGCATGGCGCAGACCCATAGGGCGGTCCGGGCTCTCTGTGACCACACTGCTGCG
GGACCTGACCAGCTGAGCTTCCGGCGTGGGGAAGTGCTGCGTGTCATCGCCACTGTGGAT
GAGGACTGGCTCCGCTGTGGAAGGGACGGAGTGGAGGGGCTAGTGCCTGTGGGGTACACA
TCCCTTGTTCTCTAGGCCCAGGACCTTTTCCTTTCCTGCAACTCTCTCCTTCCTGTCACC
TGGGAATGGAATGAACACTCACCCACGTAATCTGATCATCCCTGAAGCACTTTCCCCGTC
TGCAAAATGACACTTTCCTCCCACGTCCATTTCTGCCGTGTAAAATAAACTTTCCTTCTT
CCCTCCCATGCCCATTTATAATGTGAAATCTGCTCTTCTTCCAAATATATAAAAAGGAAT
TTCCCTCCATGCAATCTTTCCTCTTTCCAGTATGCATAAGGGAATCTCTCTCTTCCTATC
TGCAAAATGGAACTCTAACCTTCCTCTATCTTCTTCATCTGTAAGTAGACTATGCCAGTA
CCGTATATGCCTCAGTCCCAAGACCAGAAGGGCCTCTAGTCTTCTTCCTGCGTATGGAAA
CTTCCCCCACTTCACCCACCCCATGTTGCCTGTATTTATGATGTACTCATGCTATACTAG
GTGCTGAAGTTTGGACACCCCTGGTGGGTGGGCCTGTGGTGTTGGTCTGCCTCTTTCCTC
CTTTGTCCCAATAAAGAATGGGAGTTGAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|52545995|emb|CAH18462.2|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|52545995|emb|CAH18462.2|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               768-880, - strand, RNAz p=0.652358

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               768-880, - strand, RNAz p=0.652358

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-258, gnl|bosTau2|chr3 (9610021-9610278)
               

               
               1-258, gnl|Hg17|chr1 (152109737-152109997)
               

               
               1-258, gnl|Mm7|chr3 (89201776-89201519)
               


               
               382-1109, gnl|bosTau2|chr3 (9612794-9613511)
               

               
               382-1109, gnl|Hg17|chr1 (152113262-152113978)
               

               
               382-1109, gnl|Mm7|chr3 (89198456-89197776)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-258, gnl|bosTau2|chr3 (9610021-9610278)
               

               
               1-258, gnl|Hg17|chr1 (152109737-152109997)
               

               
               1-258, gnl|Mm7|chr3 (89201776-89201519)
               


               
               382-1109, gnl|bosTau2|chr3 (9612794-9613511)
               

               
               382-1109, gnl|Hg17|chr1 (152113262-152113978)
               

               
               382-1109, gnl|Mm7|chr3 (89198456-89197776)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               ece (0.45861)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-258, gnl\|bosTau2\|chr3 (9610021-9610278)
	1-258, gnl\|Hg17\|chr1 (152109737-152109997)
	1-258, gnl\|Mm7\|chr3 (89201776-89201519)

	382-1109, gnl\|bosTau2\|chr3 (9612794-9613511)
	382-1109, gnl\|Hg17\|chr1 (152113262-152113978)
	382-1109, gnl\|Mm7\|chr3 (89198456-89197776)

	ece (0.45861)
	cli (0.305623)
	sme (0.305437)
	nbm (0.198649)
	col (0.195008)
	nlu (0.191681)
	sag (0.182715)
	duo (0.172801)
	hyp (0.142837)
	nmm (0.132802)
	cov (0.132153)
	eru (0.120048)
	med (0.116252)
	eje (0.0988338)
	ldo (0.0970026)