Non-Coding RNA Search

Ss1.1-rsme37_m18.5

Sequence:


               
               CTCCTGGCATGGTAGGACCAGGCATGGTGATGGACAAGAAGATGAAGAAGAAAATGAAGA
AAGCTCATAAAAAGAAGCACAAACACCACAAGCATGGCAAGGTCAGTGCCCTCTGGAGCC
TGGCTAGGAAGAGGTGCCCCCTCAGAAGGACTAGGGTGGCTGGAGGTGGGAGGAGAGGTA
GGTGGCAGGGACAAGGAATGGGGATTCACAGTCTGAGGACTTGGGACAGGGCATTGTGTT
ACTCTGGCAGATGGTGCTTCCTTTTTGTAAAGGATTCCCACTGCGAAGAATTTAATAATC
TTGAAAATAATTATTAGGCTAATTGGGCCTTCTGTCTGCCAGGGGCTATGTTGAGCCTTA
GAATGGCTATCAGAATCAGGTGCTTTTCTTTTTTGCCTTTCTTTTCCCAGAGCTTTGGCC
TCCCCACCCCCATGCTTGTTCTGGCAAGTGGGACACACCCACTGAGGTGGTCAAATGTCA
AGACCTTTGGCCAAGCAAAGTCTTATGTAATGATAGATAATAATCTGGTCCTAGTTCCTG
GAATTTCTTTCTCTCCTTCACTGTTCTCAGCTTGTTGTATTAATTACGTAGGTCTTCTTG
TCCAGCAGGGAAACTGAGGACAAGAGCAGTCAGTGACTCAGGCTCCAATAAAACCCTCAA
TTTCGTGCTCAGTCTCAGGCTAAGTATCTTCATGCCAGAGGAGTGTAAATTAGCAAGTAG
CTCTCAGGACCNAGTAGTAAAAGTAGCTCTCAGAACCAACTCTGGAAGAATTGAACCAAC
CTTGAGATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGGCATGGTAGGACCAGGCATGGTGATGGACAAGAAGATGAAGAAGAAAATGAAGA
AAGCTCATAAAAAGAAGCACAAACACCACAAGCATGGCAAGGTCAGTGCCCTCTGGAGCC
TGGCTAGGAAGAGGTGCCCCCTCAGAAGGACTAGGGTGGCTGGAGGTGGGAGGAGAGGTA
GGTGGCAGGGACAAGGAATGGGGATTCACAGTCTGAGGACTTGGGACAGGGCATTGTGTT
ACTCTGGCAGATGGTGCTTCCTTTTTGTAAAGGATTCCCACTGCGAAGAATTTAATAATC
TTGAAAATAATTATTAGGCTAATTGGGCCTTCTGTCTGCCAGGGGCTATGTTGAGCCTTA
GAATGGCTATCAGAATCAGGTGCTTTTCTTTTTTGCCTTTCTTTTCCCAGAGCTTTGGCC
TCCCCACCCCCATGCTTGTTCTGGCAAGTGGGACACACCCACTGAGGTGGTCAAATGTCA
AGACCTTTGGCCAAGCAAAGTCTTATGTAATGATAGATAATAATCTGGTCCTAGTTCCTG
GAATTTCTTTCTCTCCTTCACTGTTCTCAGCTTGTTGTATTAATTACGTAGGTCTTCTTG
TCCAGCAGGGAAACTGAGGACAAGAGCAGTCAGTGACTCAGGCTCCAATAAAACCCTCAA
TTTCGTGCTCAGTCTCAGGCTAAGTATCTTCATGCCAGAGGAGTGTAAATTAGCAAGTAG
CTCTCAGGACCNAGTAGTAAAAGTAGCTCTCAGAACCAACTCTGGAAGAATTGAACCAAC
CTTGAGATATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PKF9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PKF9_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-183, gnl|bosTau2|chr5 (19000529-19000349)
               

               
               2-183, gnl|Hg17|chr12 (52123707-52123904)
               

               
               2-183, gnl|Mm7|chr15 (102446777-102446963)
               


               
               266-717, gnl|bosTau2|chr5 (19000318-18999838)
               

               
               266-717, gnl|Hg17|chr12 (52123937-52124972)
               

               
               266-717, gnl|Mm7|chr15 (102447044-102447470)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-183, gnl|bosTau2|chr5 (19000529-19000349)
               

               
               2-183, gnl|Hg17|chr12 (52123707-52123904)
               

               
               2-183, gnl|Mm7|chr15 (102446777-102446963)
               


               
               266-717, gnl|bosTau2|chr5 (19000318-18999838)
               

               
               266-717, gnl|Hg17|chr12 (52123937-52124972)
               

               
               266-717, gnl|Mm7|chr15 (102447044-102447470)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sme (0.305437)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)

	2-183, gnl\|bosTau2\|chr5 (19000529-19000349)
	2-183, gnl\|Hg17\|chr12 (52123707-52123904)
	2-183, gnl\|Mm7\|chr15 (102446777-102446963)

	266-717, gnl\|bosTau2\|chr5 (19000318-18999838)
	266-717, gnl\|Hg17\|chr12 (52123937-52124972)
	266-717, gnl\|Mm7\|chr15 (102447044-102447470)