Non-Coding RNA Search

Ss1.1-rspc001_c22.5

Sequence:


               
               TATATTTTTATTGGGGGGAAATTGAAGTTTCTTTATCATTAACATAGTTCAATGTAGATC
AAAACATTCCGAATAACTGCAGCTCTCTTAAACAAATATTTCTTGCCTCTGACATGCATA
TAGTGCTCAAAGATCCAGACAGCAATCCATACAGCTTACTTGATAATACAGAATCAGATC
AGACTGCAGACACTGATGCCAGCGAATCTCATCACAGTACTAACCGTCGTAGGCGGTCTC
GTAGACGAAGGACTGATGAAGATGCTGTTCTGATGGATGGGATGACTGAATCTGATACAG
CTTATACATAATCAAGAACTTAAAAATTCATCATACATTTACTTCATTTTTTAGCTTGAC
CTTCTAGTAAATCTTTAGCTTCATTGATTTTGGCCGCTATATAAGGAGATCCTCCCTTGT
CTGGGTGATTTAAAAGCATAATTCGTCGATGAGCATCTCTTATTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATTTTTATTGGGGGGAAATTGAAGTTTCTTTATCATTAACATAGTTCAATGTAGATC
AAAACATTCCGAATAACTGCAGCTCTCTTAAACAAATATTTCTTGCCTCTGACATGCATA
TAGTGCTCAAAGATCCAGACAGCAATCCATACAGCTTACTTGATAATACAGAATCAGATC
AGACTGCAGACACTGATGCCAGCGAATCTCATCACAGTACTAACCGTCGTAGGCGGTCTC
GTAGACGAAGGACTGATGAAGATGCTGTTCTGATGGATGGGATGACTGAATCTGATACAG
CTTATACATAATCAAGAACTTAAAAATTCATCATACATTTACTTCATTTTTTAGCTTGAC
CTTCTAGTAAATCTTTAGCTTCATTGATTTTGGCCGCTATATAAGGAGATCCTCCCTTGT
CTGGGTGATTTAAAAGCATAATTCGTCGATGAGCATCTCTTATTTTTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-303, gnl|bosTau2|chr1 (52713626-52713926)
               

               
               3-303, gnl|Hg17|chr3 (182170532-182170827)
               

               
               3-303, gnl|Mm7|chr3 (33872780-33873064)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-303, gnl|bosTau2|chr1 (52713626-52713926)
               

               
               3-303, gnl|Hg17|chr3 (182170532-182170827)
               

               
               3-303, gnl|Mm7|chr3 (33872780-33873064)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

	3-303, gnl\|bosTau2\|chr1 (52713626-52713926)
	3-303, gnl\|Hg17\|chr3 (182170532-182170827)
	3-303, gnl\|Mm7\|chr3 (33872780-33873064)

	cmu (0.186393)
	sag (0.182715)
	rec (0.17307)
	isp (0.150376)
	bfe (0.149858)
	kid (0.129735)
	spc (0.113366)