Non-Coding RNA Search

Ss1.1-rspc001_f21.5

Sequence:


               
               TACTTCTTTCATCAGGCTGTTGATGATGTGAAAAAAGGTTACATCAAAGCAGAGGAAAAG
TCCTACCAATTACAGAAGTTGTATGAACAAAGGAAAATGGTCATGTACCTCAATATGCTA
AGGACTTGTGAGGGCTACAATGAAATCATCTTCCCCCACTGTGCATGTGACTCCAGGAGG
AAGGGGCATGTTATCACAGCCATCAGCATCACGCACTTTAAACTGCATGCCTGCACTGAA
GAAGGACAGCTGGAGAATCAGGTAATAGCATTTGAATGGGATGAGATGCAACGATGGGAT
ACAGATGAAGAAGGAATGGCCTTCTGTTTTGAATATGCAAGAGGAGAGAAGAAGCCTCGA
TGGGTTAAAATCTTCACACCATATTTCAATTACATGCATGAATGCTTCGAGAGGGTGTTC
TGCGAGCTCAAGTGGAGAAAAGAGAACATTTTCCAGATGGCGAGGTCACAGCAGAGGGAT
GTGGCCACCTAGCCTTTCGTTACCCCCTTCCCTTCTTTTCACCCTCATCCTCTTATCCCT
TTCGTCTCCCATGTCAGACAGAGTAACCATTAACACAAAGGAAGAGAAAACGGAAAAAAG
TCATTATATTCAAAAGCCCTAAACTAAATATTATTAATAATCCCTCTGAATTTCCTATCT
CTGGAATTGAGCTGGTAGAGAACAGCAGATTGGTCAGCACCAGGAGTCAACTGAGTTAAG
ACAGGAAAAGAAATAAGCCCAACCAACTCGCCAAAGGTATCTTTGTCCTTTTACCTGGGC
CTCATACCAACAGACTCTCCTTGTACTATATTTTTAAAACTGGAACTATGAACTCCATCC
ATTTGCACTGTTCAGACATATATATGTATGTATGTAAAAATTATATATACACAAATTAGC
TGCACGTATATACATATATATATTTCTTTTTAAATTTCATATTGATGGCAGTACCTTTTT
TAGCTTGTGTTTTTACACACCTTTCACTAGAATTCATGACTTCTCTCTTGCTCTCTTTAT
TTTGAAACAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTCTTTCATCAGGCTGTTGATGATGTGAAAAAAGGTTACATCAAAGCAGAGGAAAAG
TCCTACCAATTACAGAAGTTGTATGAACAAAGGAAAATGGTCATGTACCTCAATATGCTA
AGGACTTGTGAGGGCTACAATGAAATCATCTTCCCCCACTGTGCATGTGACTCCAGGAGG
AAGGGGCATGTTATCACAGCCATCAGCATCACGCACTTTAAACTGCATGCCTGCACTGAA
GAAGGACAGCTGGAGAATCAGGTAATAGCATTTGAATGGGATGAGATGCAACGATGGGAT
ACAGATGAAGAAGGAATGGCCTTCTGTTTTGAATATGCAAGAGGAGAGAAGAAGCCTCGA
TGGGTTAAAATCTTCACACCATATTTCAATTACATGCATGAATGCTTCGAGAGGGTGTTC
TGCGAGCTCAAGTGGAGAAAAGAGAACATTTTCCAGATGGCGAGGTCACAGCAGAGGGAT
GTGGCCACCTAGCCTTTCGTTACCCCCTTCCCTTCTTTTCACCCTCATCCTCTTATCCCT
TTCGTCTCCCATGTCAGACAGAGTAACCATTAACACAAAGGAAGAGAAAACGGAAAAAAG
TCATTATATTCAAAAGCCCTAAACTAAATATTATTAATAATCCCTCTGAATTTCCTATCT
CTGGAATTGAGCTGGTAGAGAACAGCAGATTGGTCAGCACCAGGAGTCAACTGAGTTAAG
ACAGGAAAAGAAATAAGCCCAACCAACTCGCCAAAGGTATCTTTGTCCTTTTACCTGGGC
CTCATACCAACAGACTCTCCTTGTACTATATTTTTAAAACTGGAACTATGAACTCCATCC
ATTTGCACTGTTCAGACATATATATGTATGTATGTAAAAATTATATATACACAAATTAGC
TGCACGTATATACATATATATATTTCTTTTTAAATTTCATATTGATGGCAGTACCTTTTT
TAGCTTGTGTTTTTACACACCTTTCACTAGAATTCATGACTTCTCTCTTGCTCTCTTTAT
TTTGAAACAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872558|ref|XP_599359.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872558|ref|XP_599359.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               105-223, - strand, RNAz p=0.603109
               

               
               482-599, - strand, RNAz p=0.680566
               

               
               839-954, - strand, RNAz p=0.952636

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-223, - strand, RNAz p=0.603109
               

               
               482-599, - strand, RNAz p=0.680566
               

               
               839-954, - strand, RNAz p=0.952636

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               105-255, gnl|bosTau2|chr3 (15147459-15147309)
               

               
               105-255, gnl|canFam2|chr17 (63799950-63800106)
               

               
               105-255, gnl|danRer3|chr1 (17415803-17415647)
               

               
               105-255, gnl|dasNov1|scaffold_58217 (8683-8527)
               

               
               105-255, gnl|echTel1|scaffold_230641 (15075-15231)
               

               
               105-255, gnl|fr1|chrUn (214431550-214431706)
               

               
               105-255, gnl|galGal2|chrUn (97122921-97123077)
               

               
               105-255, gnl|hg17|chr1 (148477983-148478139)
               

               
               105-255, gnl|Hg17|chr1 (148477983-148478133)
               

               
               105-255, gnl|mm7|chr3 (94377560-94377404)
               

               
               105-255, gnl|Mm7|chr3 (94377558-94377408)
               

               
               105-255, gnl|monDom2|scaffold_44 (4994288-4994444)
               

               
               105-255, gnl|oryCun1|scaffold_169488 (9235-9079)
               

               
               105-255, gnl|panTro1|chr1 (130230610-130230766)
               

               
               105-255, gnl|rheMac2|chr1 (130134348-130134504)
               

               
               105-255, gnl|rn3|chr2 (189427389-189427233)
               

               
               105-255, gnl|tetNig1|chr8 (7939580-7939736)
               


               
               443-1032, gnl|bosTau2|chr3 (15145113-15144525)
               

               
               443-1032, gnl|Hg17|chr1 (148479917-148480505)
               

               
               443-1032, gnl|Mm7|chr3 (94375222-94374641)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-255, gnl|bosTau2|chr3 (15147459-15147309)
               

               
               105-255, gnl|canFam2|chr17 (63799950-63800106)
               

               
               105-255, gnl|danRer3|chr1 (17415803-17415647)
               

               
               105-255, gnl|dasNov1|scaffold_58217 (8683-8527)
               

               
               105-255, gnl|echTel1|scaffold_230641 (15075-15231)
               

               
               105-255, gnl|fr1|chrUn (214431550-214431706)
               

               
               105-255, gnl|galGal2|chrUn (97122921-97123077)
               

               
               105-255, gnl|hg17|chr1 (148477983-148478139)
               

               
               105-255, gnl|Hg17|chr1 (148477983-148478133)
               

               
               105-255, gnl|mm7|chr3 (94377560-94377404)
               

               
               105-255, gnl|Mm7|chr3 (94377558-94377408)
               

               
               105-255, gnl|monDom2|scaffold_44 (4994288-4994444)
               

               
               105-255, gnl|oryCun1|scaffold_169488 (9235-9079)
               

               
               105-255, gnl|panTro1|chr1 (130230610-130230766)
               

               
               105-255, gnl|rheMac2|chr1 (130134348-130134504)
               

               
               105-255, gnl|rn3|chr2 (189427389-189427233)
               

               
               105-255, gnl|tetNig1|chr8 (7939580-7939736)
               


               
               443-1032, gnl|bosTau2|chr3 (15145113-15144525)
               

               
               443-1032, gnl|Hg17|chr1 (148479917-148480505)
               

               
               443-1032, gnl|Mm7|chr3 (94375222-94374641)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               sme (0.305437)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	105-223, - strand, RNAz p=0.603109
	482-599, - strand, RNAz p=0.680566
	839-954, - strand, RNAz p=0.952636

	105-255, gnl\|bosTau2\|chr3 (15147459-15147309)
	105-255, gnl\|canFam2\|chr17 (63799950-63800106)
	105-255, gnl\|danRer3\|chr1 (17415803-17415647)
	105-255, gnl\|dasNov1\|scaffold_58217 (8683-8527)
	105-255, gnl\|echTel1\|scaffold_230641 (15075-15231)
	105-255, gnl\|fr1\|chrUn (214431550-214431706)
	105-255, gnl\|galGal2\|chrUn (97122921-97123077)
	105-255, gnl\|hg17\|chr1 (148477983-148478139)
	105-255, gnl\|Hg17\|chr1 (148477983-148478133)
	105-255, gnl\|mm7\|chr3 (94377560-94377404)
	105-255, gnl\|Mm7\|chr3 (94377558-94377408)
	105-255, gnl\|monDom2\|scaffold_44 (4994288-4994444)
	105-255, gnl\|oryCun1\|scaffold_169488 (9235-9079)
	105-255, gnl\|panTro1\|chr1 (130230610-130230766)
	105-255, gnl\|rheMac2\|chr1 (130134348-130134504)
	105-255, gnl\|rn3\|chr2 (189427389-189427233)
	105-255, gnl\|tetNig1\|chr8 (7939580-7939736)

	443-1032, gnl\|bosTau2\|chr3 (15145113-15144525)
	443-1032, gnl\|Hg17\|chr1 (148479917-148480505)
	443-1032, gnl\|Mm7\|chr3 (94375222-94374641)

	sme (0.305437)
	mgp (0.230681)
	sag (0.182715)
	ill (0.175593)
	eye (0.170503)
	cki (0.165235)
	bfe (0.149858)
	csk (0.140746)
	bla (0.124347)
	tra (0.123092)
	med (0.116252)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)