Non-Coding RNA Search

Ss1.1-rspc001_f24.5

Sequence:


               
               TCCTAATCTTAAAGTTGCTGATGCTTATGTAACCTAACCAAAGAGTAACCCAGTAGGGTT
TTAGTTTTGGAACTTTATTTTCGTGTGGATTATAAGCCTTGATTTTAAAGTCCATTTCCT
TGAGCAAAATATGTTTGATTTGGATGACTTAAACTTAAATTCTCTCATTAAAAATCCTTC
TTTTCTCGAAGCCCAGTCAATGTTGACTTCTGGGCAAGCCTGAAAATGCCACTTTCCTGC
AGGTGGTTTGACATTAAGGTGGAATCTTTTCAAGTGACAGAGCTGCGGAGAAATAGATGT
GCCAAAGGCTGCCATCTGTAGATAGCTGTAAAGTGGAATATTTTTAAGTGAAGGCAAATA
AGTACTTAAAAGTGAGCTGAGCAATAAAATGGTGTTCCAGGTAAATGCAACAGAAACAGA
AGGAGACCTGGTTGCCTTATACCTTTACTCTAACTTGGAATAAATCCCCACTGTATATCA
TATCTACACCGTAAATGAAGGGAAATGAATCCTTGTCTTTCAAACTGTGAGGATCCTTTG
AATATTCTGTGATGATGGAGAAGACTTTCCTTTTTCATTTGTTTTAGCATCTTTCTCTGA
AGTATGTTTTTAAAAGATTTTTGTAAGGGTCGTTTTTCAGTGTTTAAATTAGTGCTATTT
TTTTCTTTTTAAAAATGAATCTTGTACTGTATCTTACTATGTCTATAACAGATGTTAAGA
ATTGGAACAGTTTTATTCTTAGACTCATGTGATCCAATCTGTATATACCATATATAAACA
TTTTACACGAATCATTTAGTTTTTTAATTCATTTACTAATGCTGTAAACTTCCCTATATT
TACCCCCAGTAACTTGCATCAGATGGTGTATATGCTAAAGCAACATGTTTTAATGAGTTT
CTTATATCCTTGTCTATGGGGAAATTGGGTTAGGGAAAAAACAAAAACAACATAATTATA
AAGCTGAATTTGCTCCATACTTTTTTGCTTGGATATTTGTTGTATGCTAACATGTTGATT
AAACTGTCCACTTAAATCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTAATCTTAAAGTTGCTGATGCTTATGTAACCTAACCAAAGAGTAACCCAGTAGGGTT
TTAGTTTTGGAACTTTATTTTCGTGTGGATTATAAGCCTTGATTTTAAAGTCCATTTCCT
TGAGCAAAATATGTTTGATTTGGATGACTTAAACTTAAATTCTCTCATTAAAAATCCTTC
TTTTCTCGAAGCCCAGTCAATGTTGACTTCTGGGCAAGCCTGAAAATGCCACTTTCCTGC
AGGTGGTTTGACATTAAGGTGGAATCTTTTCAAGTGACAGAGCTGCGGAGAAATAGATGT
GCCAAAGGCTGCCATCTGTAGATAGCTGTAAAGTGGAATATTTTTAAGTGAAGGCAAATA
AGTACTTAAAAGTGAGCTGAGCAATAAAATGGTGTTCCAGGTAAATGCAACAGAAACAGA
AGGAGACCTGGTTGCCTTATACCTTTACTCTAACTTGGAATAAATCCCCACTGTATATCA
TATCTACACCGTAAATGAAGGGAAATGAATCCTTGTCTTTCAAACTGTGAGGATCCTTTG
AATATTCTGTGATGATGGAGAAGACTTTCCTTTTTCATTTGTTTTAGCATCTTTCTCTGA
AGTATGTTTTTAAAAGATTTTTGTAAGGGTCGTTTTTCAGTGTTTAAATTAGTGCTATTT
TTTTCTTTTTAAAAATGAATCTTGTACTGTATCTTACTATGTCTATAACAGATGTTAAGA
ATTGGAACAGTTTTATTCTTAGACTCATGTGATCCAATCTGTATATACCATATATAAACA
TTTTACACGAATCATTTAGTTTTTTAATTCATTTACTAATGCTGTAAACTTCCCTATATT
TACCCCCAGTAACTTGCATCAGATGGTGTATATGCTAAAGCAACATGTTTTAATGAGTTT
CTTATATCCTTGTCTATGGGGAAATTGGGTTAGGGAAAAAACAAAAACAACATAATTATA
AAGCTGAATTTGCTCCATACTTTTTTGCTTGGATATTTGTTGTATGCTAACATGTTGATT
AAACTGTCCACTTAAATCAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1040, gnl|bosTau2|chr12 (27590554-27591588)
               

               
               1-1040, gnl|Hg17|chr13 (76356096-76355062)
               

               
               1-1040, gnl|Mm7|chr14 (97411140-97410036)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1040, gnl|bosTau2|chr12 (27590554-27591588)
               

               
               1-1040, gnl|Hg17|chr13 (76356096-76355062)
               

               
               1-1040, gnl|Mm7|chr14 (97411140-97410036)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               clu (0.239292)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

	1-1040, gnl\|bosTau2\|chr12 (27590554-27591588)
	1-1040, gnl\|Hg17\|chr13 (76356096-76355062)
	1-1040, gnl\|Mm7\|chr14 (97411140-97410036)

	clu (0.239292)
	nco (0.161734)
	nca (0.136874)
	ute (0.132784)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	cly (0.120642)
	spc (0.113366)