Non-Coding RNA Search

Ss1.1-rspc001_k6.5

Sequence:


               
               GTGTAGGGCTTTGGCCTCTTTATTTTCTTTTTACAGTTAGTTCCGCGCGTAAAAGACTTC
ATAAAGCACTATGGCTCTGGCTACTCCCCGAATGAGCTGCTGAGGATGGAGCTGGCTATT
CTGAACAAACTGCACTGGGATCTCTACACTGGGACACCGCTGGACTTCTTGACCATAGTA
AGTATGAGGAGTTTCCCTGGACTCGTCGTGCCTTTGGAAGAGCTGTTCACAACACAGGAC
GGCAAAGCACACGTCCTTGCACATGCAGCACAGTGAGGTCACCCACAGGGCTCACGACAC
ACGGACAAGTGACATTGTATCTTCAATCCAACAGAGTTCTGCCAGACTCCCACTTCTAAA
GACATGAACTTTACAAAGATATTTAGACGGCACTATTAGAGTGAGTTTCTCTTTTAAATT
CACACTGCAAAAATATGTAACTTTCCATTCTATGAATACTGTACATAAAAATCTGTCTGC
TTTTGCTACACTTTACACACATTCATTTAGCTGTCTTTATGCACCTACCCACAATCCTTA
CTGAGGCTTTAGACCATATTGATCCGGCACTTAAAAAAATGTCATATTAGTTTGTGTTTG
TTTTAGTTGGAGGATGATGGTCGTCCTTAAGGATATGATTCCGTTAGTAAGGCAAAATTA
CGCAATGTGGAAACGTCATGGGGTTTTGGTCTGTTATGAAGCATGAAGATTAAATCACTA
AGCATTTTGAAAACCCGCCACTGTTGCCAAGTTGCAGAGTTTCTTCTCCCGTCCAGCAGA
TACAAGTAACTTTTCTGTGACCTTAATCTTGAATGGACTGTTTCTCTGTTTCAGAATTGA
AACACTGTCAGGCGGGGTACTTGAGGCTCCTAATGACCCTGCTGCAAAGCAGACTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTAGGGCTTTGGCCTCTTTATTTTCTTTTTACAGTTAGTTCCGCGCGTAAAAGACTTC
ATAAAGCACTATGGCTCTGGCTACTCCCCGAATGAGCTGCTGAGGATGGAGCTGGCTATT
CTGAACAAACTGCACTGGGATCTCTACACTGGGACACCGCTGGACTTCTTGACCATAGTA
AGTATGAGGAGTTTCCCTGGACTCGTCGTGCCTTTGGAAGAGCTGTTCACAACACAGGAC
GGCAAAGCACACGTCCTTGCACATGCAGCACAGTGAGGTCACCCACAGGGCTCACGACAC
ACGGACAAGTGACATTGTATCTTCAATCCAACAGAGTTCTGCCAGACTCCCACTTCTAAA
GACATGAACTTTACAAAGATATTTAGACGGCACTATTAGAGTGAGTTTCTCTTTTAAATT
CACACTGCAAAAATATGTAACTTTCCATTCTATGAATACTGTACATAAAAATCTGTCTGC
TTTTGCTACACTTTACACACATTCATTTAGCTGTCTTTATGCACCTACCCACAATCCTTA
CTGAGGCTTTAGACCATATTGATCCGGCACTTAAAAAAATGTCATATTAGTTTGTGTTTG
TTTTAGTTGGAGGATGATGGTCGTCCTTAAGGATATGATTCCGTTAGTAAGGCAAAATTA
CGCAATGTGGAAACGTCATGGGGTTTTGGTCTGTTATGAAGCATGAAGATTAAATCACTA
AGCATTTTGAAAACCCGCCACTGTTGCCAAGTTGCAGAGTTTCTTCTCCCGTCCAGCAGA
TACAAGTAACTTTTCTGTGACCTTAATCTTGAATGGACTGTTTCTCTGTTTCAGAATTGA
AACACTGTCAGGCGGGGTACTTGAGGCTCCTAATGACCCTGCTGCAAAGCAGACTGTCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55624754|ref|XP_517926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55624754|ref|XP_517926.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr7 (17323921-17323003)
               

               
               1-900, gnl|Hg17|chr5 (132114412-132115349)
               

               
               1-900, gnl|Mm7|chr11 (53506353-53505402)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr7 (17323921-17323003)
               

               
               1-900, gnl|Hg17|chr5 (132114412-132115349)
               

               
               1-900, gnl|Mm7|chr11 (53506353-53505402)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               spc (0.453463)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.453463)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)

	1-900, gnl\|bosTau2\|chr7 (17323921-17323003)
	1-900, gnl\|Hg17\|chr5 (132114412-132115349)
	1-900, gnl\|Mm7\|chr11 (53506353-53505402)

	spc (0.453463)
	cbe (0.239234)
	fcc (0.197785)
	fbs (0.175346)
	lun (0.150489)
	hyp (0.142837)
	ssp (0.13552)
	ova (0.129132)
	ret (0.128733)
	cbr (0.127975)
	tra (0.123092)