Non-Coding RNA Search

Ss1.1-rspc001_m24.5

Sequence:


               
               CAGCCTAGGAGGGTCGTTTCCCAGAAGAATGGGATAGGCTCATGTCCTGTCTAAATTAAC
TGGGAAAGCTCATTTCCTTCAGAGGTTCTTTCAAGAAAGGCTCGGCGACTCTGTTTCTCA
TCCTCCCAATTTGCAGGATAAATTTTTGGTTTTGAATTTTGATTTTTCATAGATGTGTAT
TATTTTGAAAATATCAAAAATAATTTATTTTACTATTCCTGGTTCTCGCAGTAGTGTCAC
CTCGTAGGCGGGACACTAGTTGAAGACTAGAGAGCTGTTGTCTTCTGTATTCTGCAGGAG
CTTTCCTACTGGGTTCCAGTAGACTCGTCACTGCAGCCTCAGCAGGCAGGCCGGGGGTCT
GGACAATGGGGACTGTCTAGGTTTTCTTCCCAGACAGAGCTTTTAAAAAAAGTAAACATC
CATGTAGAATGATTAAATGGAAAGTTGCTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTAGGAGGGTCGTTTCCCAGAAGAATGGGATAGGCTCATGTCCTGTCTAAATTAAC
TGGGAAAGCTCATTTCCTTCAGAGGTTCTTTCAAGAAAGGCTCGGCGACTCTGTTTCTCA
TCCTCCCAATTTGCAGGATAAATTTTTGGTTTTGAATTTTGATTTTTCATAGATGTGTAT
TATTTTGAAAATATCAAAAATAATTTATTTTACTATTCCTGGTTCTCGCAGTAGTGTCAC
CTCGTAGGCGGGACACTAGTTGAAGACTAGAGAGCTGTTGTCTTCTGTATTCTGCAGGAG
CTTTCCTACTGGGTTCCAGTAGACTCGTCACTGCAGCCTCAGCAGGCAGGCCGGGGGTCT
GGACAATGGGGACTGTCTAGGTTTTCTTCCCAGACAGAGCTTTTAAAAAAAGTAAACATC
CATGTAGAATGATTAAATGGAAAGTTGCTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-111, - strand, RNAz p=0.954572
               

               
               86-186, - strand, RNAz p=0.983097
               

               
               190-336, - strand, RNAz p=0.999282
               

               
               320-419, - strand, RNAz p=0.83009

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, - strand, RNAz p=0.954572
               

               
               86-186, - strand, RNAz p=0.983097
               

               
               190-336, - strand, RNAz p=0.999282
               

               
               320-419, - strand, RNAz p=0.83009

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               288-378, + strand, RNAmicro p=0.999935

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               288-378, + strand, RNAmicro p=0.999935

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK090572, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK090572, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-454, gnl|bosTau2|chr21 (34602799-34602341)
               

               
               1-454, gnl|canFam2|chr30 (13606538-13607432)
               

               
               1-454, gnl|dasNov1|scaffold_4053 (44967-44068)
               

               
               1-454, gnl|echTel1|scaffold_281406 (56707-55730)
               

               
               1-454, gnl|hg17|chr15 (41952393-41953302)
               

               
               1-454, gnl|Hg17|chr15 (41953243-41952765)
               

               
               1-454, gnl|loxAfr1|scaffold_48739 (5422-4529)
               

               
               1-454, gnl|mm7|chr2 (121288586-121289435)
               

               
               1-454, gnl|Mm7|chr2 (121289382-121288939)
               

               
               1-454, gnl|monDom2|scaffold_53 (10201240-10200344)
               

               
               1-454, gnl|oryCun1|scaffold_194689 (114054-113226)
               

               
               1-454, gnl|panTro1|chr16 (41863739-41864645)
               

               
               1-454, gnl|rheMac2|chr7 (22268641-22269530)
               

               
               1-454, gnl|rn3|chr3 (108223278-108224106)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr21 (34602799-34602341)
               

               
               1-454, gnl|canFam2|chr30 (13606538-13607432)
               

               
               1-454, gnl|dasNov1|scaffold_4053 (44967-44068)
               

               
               1-454, gnl|echTel1|scaffold_281406 (56707-55730)
               

               
               1-454, gnl|hg17|chr15 (41952393-41953302)
               

               
               1-454, gnl|Hg17|chr15 (41953243-41952765)
               

               
               1-454, gnl|loxAfr1|scaffold_48739 (5422-4529)
               

               
               1-454, gnl|mm7|chr2 (121288586-121289435)
               

               
               1-454, gnl|Mm7|chr2 (121289382-121288939)
               

               
               1-454, gnl|monDom2|scaffold_53 (10201240-10200344)
               

               
               1-454, gnl|oryCun1|scaffold_194689 (114054-113226)
               

               
               1-454, gnl|panTro1|chr16 (41863739-41864645)
               

               
               1-454, gnl|rheMac2|chr7 (22268641-22269530)
               

               
               1-454, gnl|rn3|chr3 (108223278-108224106)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fhi (0.169578)
               

               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-111, - strand, RNAz p=0.954572
	86-186, - strand, RNAz p=0.983097
	190-336, - strand, RNAz p=0.999282
	320-419, - strand, RNAz p=0.83009

	1-454, gnl\|bosTau2\|chr21 (34602799-34602341)
	1-454, gnl\|canFam2\|chr30 (13606538-13607432)
	1-454, gnl\|dasNov1\|scaffold_4053 (44967-44068)
	1-454, gnl\|echTel1\|scaffold_281406 (56707-55730)
	1-454, gnl\|hg17\|chr15 (41952393-41953302)
	1-454, gnl\|Hg17\|chr15 (41953243-41952765)
	1-454, gnl\|loxAfr1\|scaffold_48739 (5422-4529)
	1-454, gnl\|mm7\|chr2 (121288586-121289435)
	1-454, gnl\|Mm7\|chr2 (121289382-121288939)
	1-454, gnl\|monDom2\|scaffold_53 (10201240-10200344)
	1-454, gnl\|oryCun1\|scaffold_194689 (114054-113226)
	1-454, gnl\|panTro1\|chr16 (41863739-41864645)
	1-454, gnl\|rheMac2\|chr7 (22268641-22269530)
	1-454, gnl\|rn3\|chr3 (108223278-108224106)