Non-Coding RNA Search

Ss1.1-rspc002_h15.5

Sequence:


               
               TTGTAACCAGGACTCTTTTTCTTAGGGTTGCTTTTTTAATTTACCAATTGCCTTCCTCGG
GAACAAATATTTTTTTTGTATGATCCGTCTAAAAACCTCTCACCTGAGTTTATGGTGAAA
CTGTTTTGTGTTGTTGTGGTCTTGTTAAATTGGTAACAAACCAAGCTACCTGACCGCTGT
GGGAAAGTAGATTGGGGAGGAAGAAAAAACCCCCAGGGTGAGAATGTTTATATTTGCCTA
AAGATGTCCTTAACAATACACAGTATGCTTTAGGCCTGGCCTATGTAGTGATTGTATGCC
AGAAATGCAGTTATACTCAGATCAGTGATGTTCTCTCTCTTGGTAGTTTTGAACATATCA
AAGATTAAAATTGTCCTGTGTTTCTTGTTTCAAAGCACACACGTGTATGTGAAGTCTTAA
GTGTTTTATTAGCCTACAGCTAATCAGCTTATTGTAATATTGTGTGTACAATGAGATCAA
TGTTTTGTGTTTTCATCCTTTGTGAATTAAAAATTCTCACTTGTTTTTTTTTTTTTTTTT
GGTAGTAACAAAACCAGTAATATTTTCTGGTCTTGACAGCTTGATTTTTAGTAGAAAATA
TATTAAAGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTAACCAGGACTCTTTTTCTTAGGGTTGCTTTTTTAATTTACCAATTGCCTTCCTCGG
GAACAAATATTTTTTTTGTATGATCCGTCTAAAAACCTCTCACCTGAGTTTATGGTGAAA
CTGTTTTGTGTTGTTGTGGTCTTGTTAAATTGGTAACAAACCAAGCTACCTGACCGCTGT
GGGAAAGTAGATTGGGGAGGAAGAAAAAACCCCCAGGGTGAGAATGTTTATATTTGCCTA
AAGATGTCCTTAACAATACACAGTATGCTTTAGGCCTGGCCTATGTAGTGATTGTATGCC
AGAAATGCAGTTATACTCAGATCAGTGATGTTCTCTCTCTTGGTAGTTTTGAACATATCA
AAGATTAAAATTGTCCTGTGTTTCTTGTTTCAAAGCACACACGTGTATGTGAAGTCTTAA
GTGTTTTATTAGCCTACAGCTAATCAGCTTATTGTAATATTGTGTGTACAATGAGATCAA
TGTTTTGTGTTTTCATCCTTTGTGAATTAAAAATTCTCACTTGTTTTTTTTTTTTTTTTT
GGTAGTAACAAAACCAGTAATATTTTCTGGTCTTGACAGCTTGATTTTTAGTAGAAAATA
TATTAAAGGCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chrX (16373277-16373874)
               

               
               1-612, gnl|Hg17|chr10 (32135018-32134395)
               

               
               1-612, gnl|Mm7|chr18 (6228878-6228318)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chrX (16373277-16373874)
               

               
               1-612, gnl|Hg17|chr10 (32135018-32134395)
               

               
               1-612, gnl|Mm7|chr18 (6228878-6228318)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               ski (0.29347)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-612, gnl\|bosTau2\|chrX (16373277-16373874)
	1-612, gnl\|Hg17\|chr10 (32135018-32134395)
	1-612, gnl\|Mm7\|chr18 (6228878-6228318)

	ski (0.29347)
	fhi (0.169578)
	hyp (0.142837)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	spc (0.113366)