Non-Coding RNA Search

Ss1.1-rspc002_h22.5

Sequence:


               
               TGAAGAACACTTCACCTGCTCTATAGGGCCAAAGGTCAAAACATAGCAATACTCGGGGAA
AGAACACACAGGTCATGCTATGCTCCAAGTGCTTTTCCTCTTTCCTCTAGACACAGGGCA
CATGCTTTCTCTTGACTGCAGACAATGTTTAGATTATCCTTTTTCCTTTTTTTAAAACTA
TTGTGAGAGTTTGTTTCAAGTATTTCTTGATATCCTGCTACGTACTATTTTTATGACTCA
GTCAAAATGCATACAAAGAGAAATGTTTTGATGAAGTGCTCACTTCCATATTCCTTTGCA
TTTAAATCAAATTGTCTGAACACTTCAATGGAATAAATTCTGTGGACAATGTCACTTTGG
AATCTTTCATTTCAGTGAAGGATTGCACACTCTCAATACTTCCATAATTGCAGGTTTTGT
TCATTTTTTTTATATACTTTTTGTAATCCAAAGAATATTTTGCTAGATTTGCACAGATCT
CCAATTGAATTTGAAGTGAAGAAATAACTCAAAAGGAAAATGAATAGCACTTAAACAAGT
ATACAGCTGTAAGTAAGCCCATCACCGTGGATGATCCTTTTTTCTAGGAATACATTTGGA
TTCGATTTGACAACTACATTTTCACATTTTCATGTTTAAAAAAATTTTTTTAAAGGCTGT
CTACTTTTCAATAGTTAAAAGTACTTGTTTTTCTTTCTTCTTTTTTTCTCTTTTTTACTT
TAAGCCTCTATTGTTTGTAGAACCCTCTTAGAAGCTTGGAAATAAACTGTCTTTCTTGAC
TAGCAGAGTCCTTTTTCATTTGGAACATATTGCCTTAAACGTAATCTTAGTTTAAGTAGC
ACTTCCTTATTTCTGTCTGAAATGATCACTACTTCATGAAATGGATACAGCTAAAAAAGA
ACATTGCTTTATTGCTTCTTGTTCTTCAGTAGTAGGTATTGTTTCATTCATCATTCATTA
ATTCATTTACTCATCAAAATCTTATTTTGAAAACCCTGTGCTGGTTTCTTAAGGATGCAG
AATGAATCTTGCTATCTTCCTTGATATCTTTCGATCTTCCCAGCCCTGTTCCAAATTGTC
TATCCTATTGCCCTGTAATCACCTATTTACTTCCTTGTCCAACCACCTCCCCAAACAATG
AACACAACCAGTGATTTCCTCCCCTTTAGGGTTGAGGTAAGAAAAATAAATACAAGACAT
AACAGGAGATGGTGAAATGCCGACAGTGAATGGAGGGTAGACCAATCATGGCCATTCTGG
ACAGATCTTGTGTTTAGCTAAATTGCATTTTATAGGCTAGTGTTCCTGGGGATGGTGAGG
AAAATAAGAGAGCATATATCTACATCACTTGGAGAACTTATTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAACACTTCACCTGCTCTATAGGGCCAAAGGTCAAAACATAGCAATACTCGGGGAA
AGAACACACAGGTCATGCTATGCTCCAAGTGCTTTTCCTCTTTCCTCTAGACACAGGGCA
CATGCTTTCTCTTGACTGCAGACAATGTTTAGATTATCCTTTTTCCTTTTTTTAAAACTA
TTGTGAGAGTTTGTTTCAAGTATTTCTTGATATCCTGCTACGTACTATTTTTATGACTCA
GTCAAAATGCATACAAAGAGAAATGTTTTGATGAAGTGCTCACTTCCATATTCCTTTGCA
TTTAAATCAAATTGTCTGAACACTTCAATGGAATAAATTCTGTGGACAATGTCACTTTGG
AATCTTTCATTTCAGTGAAGGATTGCACACTCTCAATACTTCCATAATTGCAGGTTTTGT
TCATTTTTTTTATATACTTTTTGTAATCCAAAGAATATTTTGCTAGATTTGCACAGATCT
CCAATTGAATTTGAAGTGAAGAAATAACTCAAAAGGAAAATGAATAGCACTTAAACAAGT
ATACAGCTGTAAGTAAGCCCATCACCGTGGATGATCCTTTTTTCTAGGAATACATTTGGA
TTCGATTTGACAACTACATTTTCACATTTTCATGTTTAAAAAAATTTTTTTAAAGGCTGT
CTACTTTTCAATAGTTAAAAGTACTTGTTTTTCTTTCTTCTTTTTTTCTCTTTTTTACTT
TAAGCCTCTATTGTTTGTAGAACCCTCTTAGAAGCTTGGAAATAAACTGTCTTTCTTGAC
TAGCAGAGTCCTTTTTCATTTGGAACATATTGCCTTAAACGTAATCTTAGTTTAAGTAGC
ACTTCCTTATTTCTGTCTGAAATGATCACTACTTCATGAAATGGATACAGCTAAAAAAGA
ACATTGCTTTATTGCTTCTTGTTCTTCAGTAGTAGGTATTGTTTCATTCATCATTCATTA
ATTCATTTACTCATCAAAATCTTATTTTGAAAACCCTGTGCTGGTTTCTTAAGGATGCAG
AATGAATCTTGCTATCTTCCTTGATATCTTTCGATCTTCCCAGCCCTGTTCCAAATTGTC
TATCCTATTGCCCTGTAATCACCTATTTACTTCCTTGTCCAACCACCTCCCCAAACAATG
AACACAACCAGTGATTTCCTCCCCTTTAGGGTTGAGGTAAGAAAAATAAATACAAGACAT
AACAGGAGATGGTGAAATGCCGACAGTGAATGGAGGGTAGACCAATCATGGCCATTCTGG
ACAGATCTTGTGTTTAGCTAAATTGCATTTTATAGGCTAGTGTTCCTGGGGATGGTGAGG
AAAATAAGAGAGCATATATCTACATCACTTGGAGAACTTATTTTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-389, + strand, RNAz p=0.606333

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-389, + strand, RNAz p=0.606333

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1367, gnl|bosTau2|chr18 (27442381-27443704)
               

               
               1-1367, gnl|Hg17|chr16 (63537408-63536053)
               

               
               1-1367, gnl|Mm7|chr8 (101226572-101225360)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1367, gnl|bosTau2|chr18 (27442381-27443704)
               

               
               1-1367, gnl|Hg17|chr16 (63537408-63536053)
               

               
               1-1367, gnl|Mm7|chr8 (101226572-101225360)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               spc (0.113366)

	1-1367, gnl\|bosTau2\|chr18 (27442381-27443704)
	1-1367, gnl\|Hg17\|chr16 (63537408-63536053)
	1-1367, gnl\|Mm7\|chr8 (101226572-101225360)