Non-Coding RNA Search

Ss1.1-rspc002_l20.5

Sequence:


               
               GGTGGCAGCAATATTGGTGTGATTGAGGTTATGCTGGCACCACTCGCACACAGGCGCACA
ATGGTGTTAGCTGGGCAGAAAGAGTGGCATCTCTGGCTACCGGGCTGGGGGCGACCTTTA
CCATAGGATGAAGTAACCTTGCATTCGGCTGCAAGGTGTACTGTACGTACACAGGTGCTG
GTCGATGTCCACTTTCTGCTTTTCTTTCTTTCTTTTTTTCTTTTTAAAAATGATTTTCCC
CACAGTGAAACCAACTGACTCCTCCGAGTAAATTGATCCTCCAGTCTGGTGGAATTGGGA
GTCTGACATGTGAAACCAATTTAATGTAATGTAATTGGCTTTCAAATGGTTTCTCTGTGC
TGTTTTTTGGAATTCTTTGAGATACTAGAGATACCTTAAGTCTTAGATCCAATTTAAAAT
TTGTGTTTATTTTTCTATGGAAATAATATATTATGTCTGTGCAGAAAAAAAGTAGTAAAA
AGGATTGCTTTACTCCAAGAGGAGGAGAGATTGTCTTACTAGGATTGTTATAAACCTCCA
AGCTCACATTTAACATAACAGACTGAAGTAAATGTTAGAGTACTGTTTAGAGCTATTCTG
CACAGTCTAACTCCTGATCTTTAGAATCTAAAATTATGTGTGAACTTGTACTAAGTAATT
AAAAAGTTTGATACTTTAAATGACTAATGATTGTGGTCGGTTTGGGAAAAATAAGATTGG
CAAATCTTGACTCACAGAAATGTTAATTGTATTATTTTCGTAAATTAGCATTTTCATTTT
GTAATGTGGTTTAACATCCTGTTGTTTGCCAAAGAAATTTCATTTGGCTGTGAAAATTCT
CTTTGCTTGCAGTATCTGTTTCTCTTCCTAGGCTCACGTTGGTGACCCAAGCCTATTGTA
AACAAGTGATTATCTCAAAGGGAGATGCCAATGGAGTAACAATTTGTTAACCTTACATTT
TCTGTCTGTATATTTTTTAAAAATTTGGTAGTTTCTGGAAAAAAAGAAGGGGGTTTGTAG
TACTTAACCCTGTTTATTTCTGTATATTTTAGTTAATTAGTCTTTGGAATAAATGGATTT
CAGTATAACTTTGTGGTTAAATTGCATTGCCTTTTTTGTGTTTAGGCTTATTTTTTAATT
AACATTTAACAGAAACATTTGAAATAGAATTTGCATGTCTACTTTAATTAACTTAAAGAC
TGATTTTTTTTTAATCTATGACACTGAGCATATTTTTAATTATTCATAAATTATAATGTT
TAATTTAATATCTTAATTAAATTTAGCAGTTTTAGTTTAAGATGTGCCATTTTGTCCTCT
GTGTGTCTGAATGAAGCTATAACATTTGCCTTTTTTTGCAGGTTTTCCTTTGGGATATGG
ATAAATATACCATGATACGGAAACTAGAGGGACATCACCATGATGTTGTAGCTTGTGACT
TTTCTCCTGATGGAGCTTTACTGGCTACGGCATCTTATGATACTCGAGTGTATATCTGGG
ATCCACACACTGGAGACATTTTGATGGAATTTGGGCACCTGTTCCCTCCACCCACTCCAA
TATTTGCTGGAGGAGCAAATGACCGATGGGTACGATCTGTATCATTTAGTCATGATGGAC
TGCATGTTGCAAGCCTTGCTGATGATAAAATGGTGAGGTTCTGGAGAATTGATGAAGATT
ATCCAGTGCAAGTTGCACCTTTGAGCAATGGTCTTTGCTGTGCCTTTTCTACTGATGGCA
GTGTTCTAGCTGCTGGGACACATGATGGAAGTGTTTATTTTTGGGCCACTCCAAGGCAAG
TCCCTAGCCTTCAACATTTATGTCGTATGTCAATCCGGAGAGTGATGCCCACCCAAGAAG
TCCAGGAGCTGCCAATTCCTTCCAAAGTCTTAGAGTTTCTCTCCTACCGTATTTAGAGGA
CGCTGCCTTTCCTCAACCTAGGGACTGACAACACACTTCACACAAACCTAAAGCTTTACT
TTAAGGTTTAGGAGATTAATTTAATGATACATTCTTGTGTTGCATTTTGATCAGTTGAGC
TTTTAAAATATTATTTATAGACCATAGAACTATTTCTGAACATATCAACTGTAAATTTTT
TTTCTAAACTTAACTGTGAAAACATATACATACATGTATATATTTAGATATAAGCTGCTA
TGTGTTGAATGGACCCCTTTGCTTTTCTAATTTTTAGTTCCAACATGTATATATCGCTTC
AGTAGAGCCACAGTGTGTATCTTTGCTGTGAAGTGGAAGGAATTTTTTTTATCCTGACAT
TGAGTAAGATGGCAGATGCTGACTTAAGAAAGGTGAATTGCCTCATACAATATGTGTATT
TGGTTGGGAGGATCAGGTGACTGACCTGAAAGTAAAACACAGTTTTTGTCTAGGAAAGGA
TTTTGTTTTCCTTAGGAGTGTCAGAGAAGTAGAATTTGAATGTGACATTATTAAATAGAA
AACAGAACCAGGATATAACCAGAAAAAAAGTGTACCCCCCCATAACTGCCGCTGCAGGCC
TTAATTTTGGAAAGCAGCTTGCTTCTTTAACCCCTGTGGTATAAGTATTATAAATTTTAG
TCAATTTGAGAAATCCATCTACTGTATTATTACTAAATATTTTTTTGTTTGTACTAAGGG
ACAGTTATTTGAAGACTATGAAGACCATCATGGTTTTTTGGGTTTTTTTTAATTTGTTTT
GGAGGGGTGGCTTTTAATTTTTTACACATATCCTGTGTTTCTGAAGGGGATAATATTGGT
GACTTGCCAAAGAGAAGCAATATAGTATGTCTGCTTTTGCCTTCTGTTATTTATCTTACC
TGCAGATATTAAGAATGTATGCATTATGTAAAATGCTTGATTATATATTTTTGTTGAGTT
TTTTAATTAAAGACTTGTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCAGCAATATTGGTGTGATTGAGGTTATGCTGGCACCACTCGCACACAGGCGCACA
ATGGTGTTAGCTGGGCAGAAAGAGTGGCATCTCTGGCTACCGGGCTGGGGGCGACCTTTA
CCATAGGATGAAGTAACCTTGCATTCGGCTGCAAGGTGTACTGTACGTACACAGGTGCTG
GTCGATGTCCACTTTCTGCTTTTCTTTCTTTCTTTTTTTCTTTTTAAAAATGATTTTCCC
CACAGTGAAACCAACTGACTCCTCCGAGTAAATTGATCCTCCAGTCTGGTGGAATTGGGA
GTCTGACATGTGAAACCAATTTAATGTAATGTAATTGGCTTTCAAATGGTTTCTCTGTGC
TGTTTTTTGGAATTCTTTGAGATACTAGAGATACCTTAAGTCTTAGATCCAATTTAAAAT
TTGTGTTTATTTTTCTATGGAAATAATATATTATGTCTGTGCAGAAAAAAAGTAGTAAAA
AGGATTGCTTTACTCCAAGAGGAGGAGAGATTGTCTTACTAGGATTGTTATAAACCTCCA
AGCTCACATTTAACATAACAGACTGAAGTAAATGTTAGAGTACTGTTTAGAGCTATTCTG
CACAGTCTAACTCCTGATCTTTAGAATCTAAAATTATGTGTGAACTTGTACTAAGTAATT
AAAAAGTTTGATACTTTAAATGACTAATGATTGTGGTCGGTTTGGGAAAAATAAGATTGG
CAAATCTTGACTCACAGAAATGTTAATTGTATTATTTTCGTAAATTAGCATTTTCATTTT
GTAATGTGGTTTAACATCCTGTTGTTTGCCAAAGAAATTTCATTTGGCTGTGAAAATTCT
CTTTGCTTGCAGTATCTGTTTCTCTTCCTAGGCTCACGTTGGTGACCCAAGCCTATTGTA
AACAAGTGATTATCTCAAAGGGAGATGCCAATGGAGTAACAATTTGTTAACCTTACATTT
TCTGTCTGTATATTTTTTAAAAATTTGGTAGTTTCTGGAAAAAAAGAAGGGGGTTTGTAG
TACTTAACCCTGTTTATTTCTGTATATTTTAGTTAATTAGTCTTTGGAATAAATGGATTT
CAGTATAACTTTGTGGTTAAATTGCATTGCCTTTTTTGTGTTTAGGCTTATTTTTTAATT
AACATTTAACAGAAACATTTGAAATAGAATTTGCATGTCTACTTTAATTAACTTAAAGAC
TGATTTTTTTTTAATCTATGACACTGAGCATATTTTTAATTATTCATAAATTATAATGTT
TAATTTAATATCTTAATTAAATTTAGCAGTTTTAGTTTAAGATGTGCCATTTTGTCCTCT
GTGTGTCTGAATGAAGCTATAACATTTGCCTTTTTTTGCAGGTTTTCCTTTGGGATATGG
ATAAATATACCATGATACGGAAACTAGAGGGACATCACCATGATGTTGTAGCTTGTGACT
TTTCTCCTGATGGAGCTTTACTGGCTACGGCATCTTATGATACTCGAGTGTATATCTGGG
ATCCACACACTGGAGACATTTTGATGGAATTTGGGCACCTGTTCCCTCCACCCACTCCAA
TATTTGCTGGAGGAGCAAATGACCGATGGGTACGATCTGTATCATTTAGTCATGATGGAC
TGCATGTTGCAAGCCTTGCTGATGATAAAATGGTGAGGTTCTGGAGAATTGATGAAGATT
ATCCAGTGCAAGTTGCACCTTTGAGCAATGGTCTTTGCTGTGCCTTTTCTACTGATGGCA
GTGTTCTAGCTGCTGGGACACATGATGGAAGTGTTTATTTTTGGGCCACTCCAAGGCAAG
TCCCTAGCCTTCAACATTTATGTCGTATGTCAATCCGGAGAGTGATGCCCACCCAAGAAG
TCCAGGAGCTGCCAATTCCTTCCAAAGTCTTAGAGTTTCTCTCCTACCGTATTTAGAGGA
CGCTGCCTTTCCTCAACCTAGGGACTGACAACACACTTCACACAAACCTAAAGCTTTACT
TTAAGGTTTAGGAGATTAATTTAATGATACATTCTTGTGTTGCATTTTGATCAGTTGAGC
TTTTAAAATATTATTTATAGACCATAGAACTATTTCTGAACATATCAACTGTAAATTTTT
TTTCTAAACTTAACTGTGAAAACATATACATACATGTATATATTTAGATATAAGCTGCTA
TGTGTTGAATGGACCCCTTTGCTTTTCTAATTTTTAGTTCCAACATGTATATATCGCTTC
AGTAGAGCCACAGTGTGTATCTTTGCTGTGAAGTGGAAGGAATTTTTTTTATCCTGACAT
TGAGTAAGATGGCAGATGCTGACTTAAGAAAGGTGAATTGCCTCATACAATATGTGTATT
TGGTTGGGAGGATCAGGTGACTGACCTGAAAGTAAAACACAGTTTTTGTCTAGGAAAGGA
TTTTGTTTTCCTTAGGAGTGTCAGAGAAGTAGAATTTGAATGTGACATTATTAAATAGAA
AACAGAACCAGGATATAACCAGAAAAAAAGTGTACCCCCCCATAACTGCCGCTGCAGGCC
TTAATTTTGGAAAGCAGCTTGCTTCTTTAACCCCTGTGGTATAAGTATTATAAATTTTAG
TCAATTTGAGAAATCCATCTACTGTATTATTACTAAATATTTTTTTGTTTGTACTAAGGG
ACAGTTATTTGAAGACTATGAAGACCATCATGGTTTTTTGGGTTTTTTTTAATTTGTTTT
GGAGGGGTGGCTTTTAATTTTTTACACATATCCTGTGTTTCTGAAGGGGATAATATTGGT
GACTTGCCAAAGAGAAGCAATATAGTATGTCTGCTTTTGCCTTCTGTTATTTATCTTACC
TGCAGATATTAAGAATGTATGCATTATGTAAAATGCTTGATTATATATTTTTGTTGAGTT
TTTTAATTAAAGACTTGTTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5410334|gb|AAD43037.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5410334|gb|AAD43037.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               80-235, + strand, RNAz p=0.924234
               

               
               785-899, - strand, RNAz p=0.68296
               

               
               1016-1133, - strand, RNAz p=0.563215
               

               
               1365-1535, - strand, RNAz p=0.99733
               

               
               2714-2828, + strand, RNAz p=0.999737

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-235, + strand, RNAz p=0.924234
               

               
               785-899, - strand, RNAz p=0.68296
               

               
               1016-1133, - strand, RNAz p=0.563215
               

               
               1365-1535, - strand, RNAz p=0.99733
               

               
               2714-2828, + strand, RNAz p=0.999737

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of BC048007, +
               

               
               3' of NM_134264, +
               

               
               3' of BC048007, +

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC048007, +
               

               
               3' of NM_134264, +
               

               
               3' of BC048007, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1535, gnl|bosTau2|chr19 (9445109-9443556)
               

               
               1-1535, gnl|Hg17|chr17 (22658899-22660426)
               

               
               1-1535, gnl|Mm7|chr11 (79325148-79323558)
               


               
               1756-2691, gnl|bosTau2|chr19 (9441623-9440676)
               

               
               1756-2691, gnl|Hg17|chr17 (22663362-22664598)
               

               
               1756-2691, gnl|Mm7|chr11 (79322038-79321138)
               


               
               2714-2896, gnl|bosTau2|chr19 (9440684-9440508)
               

               
               2714-2896, gnl|Hg17|chr17 (22664588-22664770)
               

               
               2714-2896, gnl|Mm7|chr11 (79321141-79320970)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1535, gnl|bosTau2|chr19 (9445109-9443556)
               

               
               1-1535, gnl|Hg17|chr17 (22658899-22660426)
               

               
               1-1535, gnl|Mm7|chr11 (79325148-79323558)
               


               
               1756-2691, gnl|bosTau2|chr19 (9441623-9440676)
               

               
               1756-2691, gnl|Hg17|chr17 (22663362-22664598)
               

               
               1756-2691, gnl|Mm7|chr11 (79322038-79321138)
               


               
               2714-2896, gnl|bosTau2|chr19 (9440684-9440508)
               

               
               2714-2896, gnl|Hg17|chr17 (22664588-22664770)
               

               
               2714-2896, gnl|Mm7|chr11 (79321141-79320970)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

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               liv (1.17027)
               

               
               elu (1.15607)
               

               
               eje (0.889504)
               

               
               kid (0.778412)
               

               
               spl (0.715922)
               

               
               eru (0.60024)
               

               
               gul (0.532765)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               fat (0.442282)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.17027)
               

               
               elu (1.15607)
               

               
               eje (0.889504)
               

               
               kid (0.778412)
               

               
               spl (0.715922)
               

               
               eru (0.60024)
               

               
               gul (0.532765)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               fat (0.442282)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	80-235, + strand, RNAz p=0.924234
	785-899, - strand, RNAz p=0.68296
	1016-1133, - strand, RNAz p=0.563215
	1365-1535, - strand, RNAz p=0.99733
	2714-2828, + strand, RNAz p=0.999737

	1-1535, gnl\|bosTau2\|chr19 (9445109-9443556)
	1-1535, gnl\|Hg17\|chr17 (22658899-22660426)
	1-1535, gnl\|Mm7\|chr11 (79325148-79323558)

	1756-2691, gnl\|bosTau2\|chr19 (9441623-9440676)
	1756-2691, gnl\|Hg17\|chr17 (22663362-22664598)
	1756-2691, gnl\|Mm7\|chr11 (79322038-79321138)

	2714-2896, gnl\|bosTau2\|chr19 (9440684-9440508)
	2714-2896, gnl\|Hg17\|chr17 (22664588-22664770)
	2714-2896, gnl\|Mm7\|chr11 (79321141-79320970)

	liv (1.17027)
	elu (1.15607)
	eje (0.889504)
	kid (0.778412)
	spl (0.715922)
	eru (0.60024)
	gul (0.532765)
	sin (0.524843)
	ova (0.516529)
	fat (0.442282)
	tes (0.415628)
	aor (0.390549)
	bla (0.373042)
	fbs (0.350693)
	sme (0.305437)
	csk (0.281492)
	fce (0.271592)
	thg (0.253582)
	ese (0.253004)
	tra (0.246184)
	pan (0.23596)
	med (0.232504)
	jca (0.22792)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	fco (0.157208)
	eli (0.151814)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cbr (0.127975)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)