Non-Coding RNA Search

Ss1.1-rspc002_n3.5

Sequence:


               
               CCACATAGGATGGAACAAAGAGTAACCTAGAATGCATCCTGGGTTATCTTTGTCTCCTTC
CCTCCTGGCCCTGAGATGCTGAAATCAAAGTTATTCCCCAGCTTTCACCTCACCTAGGAG
ATCAGGATTATTCTACTGACTTCCTGGGCAACCAGTGGGTTTAATCTTCCTTGAGAAGAT
GACAGAGTTTGCCTGTGGCTATAGGAGATCTATTTCATCTGGACCTTTTTTCCTTTCACA
GTTTCTTGAATCAGTGTGCCCTGTAATTAGGCCTGAGTTTATGCAGTTTAAGCCATCTTT
TGTGTACACTGTGTTCAAACCAGATAGAAAAATCATGGGACCACTTCCAGAAACCTTTAA
GCTAACTGTCACTCTCATGACAGCTTATGGTTTGTGCCAAACACTTAACATGGAAAAGGA
ATCCCAGATTTAAGGTCATTTACCTGGGTTTTGTCCTATAAAGGCATTTGTAATAGGGAA
AGAATATTTTTTTTTTTTTTGCTCATTCAATTACATATGTTCTCTTTATGAATGAATTTT
ATGTTCTCTAGCCCTCTTTAAAAGAATTTTAGAGCTATAAAATAAACTCTTTATCTGCCA
TATACCATTGCTGCATATAAATAACAGTTATTGTGGGTAATCTGGATCATTGACCTTTGT
GCTTTCATTCTTAGAGATGTGTCCTATTCCCATGAACTAAAAGCCGTTGCCCAAAGTGAT
GGATGTGGGTTTTCTTACTAGCCACAAGCCCTGGTGGCAGAGTTGAGGAACAGGGAAATA
GCACTGTGAAGTTTTCAAGAAAGGACTTCCATTTAAACTCTCCATGGAGTGTGCTTCCCT
GTGCTCAGTGGAGCTCTCAGTCCGTCCCTCCTTCAGGGATGTTCCTTTTGGTAATCTTGA
AATCTAAATTTATATGTGAAATGCTACCTTTTTAAAAAAAGAAACTAAATAAAATTATTT
TACTATCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACATAGGATGGAACAAAGAGTAACCTAGAATGCATCCTGGGTTATCTTTGTCTCCTTC
CCTCCTGGCCCTGAGATGCTGAAATCAAAGTTATTCCCCAGCTTTCACCTCACCTAGGAG
ATCAGGATTATTCTACTGACTTCCTGGGCAACCAGTGGGTTTAATCTTCCTTGAGAAGAT
GACAGAGTTTGCCTGTGGCTATAGGAGATCTATTTCATCTGGACCTTTTTTCCTTTCACA
GTTTCTTGAATCAGTGTGCCCTGTAATTAGGCCTGAGTTTATGCAGTTTAAGCCATCTTT
TGTGTACACTGTGTTCAAACCAGATAGAAAAATCATGGGACCACTTCCAGAAACCTTTAA
GCTAACTGTCACTCTCATGACAGCTTATGGTTTGTGCCAAACACTTAACATGGAAAAGGA
ATCCCAGATTTAAGGTCATTTACCTGGGTTTTGTCCTATAAAGGCATTTGTAATAGGGAA
AGAATATTTTTTTTTTTTTTGCTCATTCAATTACATATGTTCTCTTTATGAATGAATTTT
ATGTTCTCTAGCCCTCTTTAAAAGAATTTTAGAGCTATAAAATAAACTCTTTATCTGCCA
TATACCATTGCTGCATATAAATAACAGTTATTGTGGGTAATCTGGATCATTGACCTTTGT
GCTTTCATTCTTAGAGATGTGTCCTATTCCCATGAACTAAAAGCCGTTGCCCAAAGTGAT
GGATGTGGGTTTTCTTACTAGCCACAAGCCCTGGTGGCAGAGTTGAGGAACAGGGAAATA
GCACTGTGAAGTTTTCAAGAAAGGACTTCCATTTAAACTCTCCATGGAGTGTGCTTCCCT
GTGCTCAGTGGAGCTCTCAGTCCGTCCCTCCTTCAGGGATGTTCCTTTTGGTAATCTTGA
AATCTAAATTTATATGTGAAATGCTACCTTTTTAAAAAAAGAAACTAAATAAAATTATTT
TACTATCAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               385-500, - strand, RNAz p=0.592716
               

               
               738-852, + strand, RNAz p=0.999235

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-500, - strand, RNAz p=0.592716
               

               
               738-852, + strand, RNAz p=0.999235

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127017, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127017, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-968, gnl|bosTau2|chr26 (11845673-11844719)
               

               
               1-968, gnl|Hg17|chr10 (101900800-101899841)
               

               
               1-968, gnl|Mm7|chr19 (43929740-43928820)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-968, gnl|bosTau2|chr26 (11845673-11844719)
               

               
               1-968, gnl|Hg17|chr10 (101900800-101899841)
               

               
               1-968, gnl|Mm7|chr19 (43929740-43928820)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               amn (0.417711)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	385-500, - strand, RNAz p=0.592716
	738-852, + strand, RNAz p=0.999235

	1-968, gnl\|bosTau2\|chr26 (11845673-11844719)
	1-968, gnl\|Hg17\|chr10 (101900800-101899841)
	1-968, gnl\|Mm7\|chr19 (43929740-43928820)

	amn (0.417711)
	sin (0.349895)
	vin (0.332557)
	ski (0.29347)
	cte (0.29274)
	nms (0.213858)
	hea (0.204499)
	jej (0.197844)
	col (0.195008)
	sag (0.182715)
	fbs (0.175346)
	rec (0.17307)
	mcp (0.170648)
	lun (0.150489)
	fat (0.147427)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	spc (0.113366)